Here is a list of all namespace members with links to the namespace documentation for each member:

- f -

• facet_containing_position() : protocols::forge::methods
• FaDockingSlideIntoContactCOP : protocols::docking
• FaDockingSlideIntoContactOP : protocols::docking
• FAIL_BAD_INPUT : protocols::moves
• FAIL_DO_NOT_RETRY : protocols::moves
• FAIL_RETRY : protocols::moves
• Failure : protocols::loops::loop_mover
• fake_hit() : protocols::match
• fall_back() : protocols::noesy_assign
• FArray2D_double : protocols::canonical_sampling::mc_convergence_checks
• FArray3D_double : protocols::canonical_sampling::mc_convergence_checks
• FASelectSlidingWindowLoopClosureCOP : protocols::loops::loop_closure::ccd
• FASelectSlidingWindowLoopClosureOP : protocols::loops::loop_closure::ccd
• fast2DRotAlignPose() : protocols::electron_density
• fast_ccd_close_loops() : protocols::loops::loop_mover::perturb
• fast_clash_check() : protocols::forge::remodel , protocols::toolbox::pose_metric_calculators
• FAST_FORWARD_TO_NEXT_RESIDUE_ALTERNATIVE : protocols::stepwise::screener
• fast_forward_to_next_residue_pair() : protocols::stepwise::screener
• FAST_FORWARD_TO_NEXT_RIGID_BODY : protocols::stepwise::screener
• FastaInputterSP : protocols::inputter
• FastForwardToNextResidueAlternativeCOP : protocols::stepwise::screener
• FastForwardToNextResidueAlternativeOP : protocols::stepwise::screener
• FastForwardToNextRigidBodyCOP : protocols::stepwise::screener
• FastForwardToNextRigidBodyOP : protocols::stepwise::screener
• FastGapMoverCOP : protocols::loophash
• FastGapMoverOP : protocols::loophash
• FastRelaxAP : protocols::relax
• FastRelaxCAP : protocols::relax
• FastRelaxCOP : protocols::relax
• FastRelaxOP : protocols::relax
• fastTransAlignPose() : protocols::electron_density
• FaSymDockingSlideTogetherCOP : protocols::simple_moves::symmetry
• FaSymDockingSlideTogetherOP : protocols::simple_moves::symmetry
• favor_nonnative_residue_tracer() : protocols::protein_interface_design::movers
• FavorSymmetricSequenceCOP : protocols::simple_moves
• FavorSymmetricSequenceOP : protocols::simple_moves
• Fd_like : protocols::fldsgn::topology
• FE : protocols::sic_dock::scores
• FeaturesReporterCOP : protocols::features
• FeaturesReporterCreatorCOP : protocols::features
• FeaturesReporterCreatorOP : protocols::features
• FeaturesReporterOP : protocols::features
• FibrilModelingClaimerAP : protocols::topology_broker
• FibrilModelingClaimerCAP : protocols::topology_broker
• FibrilModelingClaimerCOP : protocols::topology_broker
• FibrilModelingClaimerOP : protocols::topology_broker
• figure_out_base_pair_partner() : protocols::farna
• figure_out_dock_domain_map() : protocols::stepwise::setup
• figure_out_fixed_domain_map() : protocols::stepwise::setup
• figure_out_motif_mode() : protocols::stepwise::setup
• figure_out_moving_chain_break_res() : protocols::stepwise::modeler
• figure_out_moving_chain_breaks() : protocols::stepwise::modeler
• figure_out_moving_cutpoints_closed() : protocols::stepwise::modeler
• figure_out_moving_cutpoints_closed_from_moving_res() : protocols::stepwise::modeler
• figure_out_moving_partition_res() : protocols::stepwise::modeler , protocols::toolbox::rigid_body
• figure_out_moving_partition_res_for_jump() : protocols::stepwise::modeler
• figure_out_moving_partition_res_for_suite() : protocols::stepwise::modeler
• figure_out_moving_rna_chain_breaks() : protocols::stepwise::modeler::rna
• figure_out_protein_modeling_info() : protocols::stepwise::modeler::protein
• figure_out_rebuild_bulge_mode() : protocols::stepwise::modeler::working_parameters
• figure_out_reference_res_for_jump() : protocols::toolbox::rigid_body
• figure_out_reference_res_for_suite() : protocols::stepwise::modeler
• figure_out_root_and_moving_partition_res() : protocols::stepwise::modeler
• figure_out_root_partition_res() : protocols::stepwise::modeler
• figure_out_sample_both_sugar_base_rotamer() : protocols::stepwise::modeler::working_parameters
• figure_out_sample_res() : protocols::stepwise::setup
• figure_out_secstruct() : protocols::farna
• figure_out_stepwise_movemap() : protocols::stepwise::modeler::movemap
• figure_out_working_interface_res() : protocols::stepwise::modeler::packer
• figure_out_working_res() : protocols::stepwise::setup
• file_exists() : protocols::stepwise::modeler::rna
• file_full_path() : protocols::toolbox
• FileContentsMapCOP : protocols::pack_daemon
• FileContentsMapOP : protocols::pack_daemon
• FileJobOutputterOP : protocols::jd2
• filename() : protocols::abinitio
• fill_A_line() : protocols::scoring::methods::pcs , protocols::scoring::methods::pcsTs1 , protocols::scoring::methods::pcsTs2 , protocols::scoring::methods::pcsTs3 , protocols::scoring::methods::pcsTs4
• fill_A_line_fast() : protocols::scoring::methods::pcs2
• fill_A_line_slow() : protocols::scoring::methods::pcs2
• fill_CA_coords() : protocols::toolbox
• fill_full_model_info_from_command_line() : protocols::stepwise::setup
• fill_grid_with_backbone_heavyatom_spheres() : protocols::match
• fill_grid_with_residue_heavyatom_spheres() : protocols::match
• fill_grid_with_residue_spheres() : protocols::match
• fill_in_gaps() : protocols::frags
• fill_non_loop_cst_set() : protocols::forge::methods
• fill_plane_hash() : protocols::sic_dock
• fill_tags_() : protocols::jumping
• filter_for_proximity() : protocols::stepwise::monte_carlo::mover
• filter_loop_neighbors_by_distance() : protocols::loops
• filter_out_bulge_res() : protocols::stepwise::monte_carlo
• filter_type : protocols::generalized_kinematic_closure::filter
• FilterCollectionCOP : protocols::filters
• FilterCollectionOP : protocols::filters
• FilterCOP : protocols::filters
• FilterCOPs : protocols::filters
• FilterCreatorCOP : protocols::filters
• FilterCreatorOP : protocols::filters
• FilteredSolutionsCOP : protocols::kinematic_closure::solution_pickers
• FilteredSolutionsOP : protocols::kinematic_closure::solution_pickers
• FilterFactoryCOP : protocols::filters
• FilterFactoryOP : protocols::filters
• FilterMoverOP : protocols::moves
• FilterOP : protocols::filters
• FilterOPs : protocols::filters
• FilterReporterMoverCOP : protocols::moves
• FilterReporterMoverOP : protocols::moves
• Filters_map : protocols::filters
• FilterScanFilterCOP : protocols::protein_interface_design::filters
• FilterScanFilterOP : protocols::protein_interface_design::filters
• FilterSP : protocols::filters
• FilterStructs_PackstatOP : protocols::flxbb
• FilterStructs_TotalChargeOP : protocols::flxbb
• FilterStructsOP : protocols::flxbb
• FinalMinimizer_tracer() : protocols::ligand_docking
• FinalMinimizerCOP : protocols::ligand_docking
• FinalMinimizerCOPs : protocols::ligand_docking
• FinalMinimizerOP : protocols::ligand_docking
• FinalMinimizerOPs : protocols::ligand_docking
• find_attach_pt() : protocols::ligand_docking
• find_basepairs() : protocols::dna
• find_best_anchor() : protocols::electron_density
• find_closest_atom() : protocols::metal_interface
• Find_Closest_Intersect_SQ() : protocols::pockets
• find_connecting_jump() : protocols::forge::methods
• find_cutpoint() : protocols::forge::methods
• find_disulfide_partner() : protocols::abinitio::abscript
• find_downstream_connection_res() : protocols::stepwise::modeler
• find_existing_residues() : protocols::evaluation
• find_filter_or_die() : protocols::moves
• find_first_root_residue() : protocols::stepwise::modeler
• find_implied_cut() : protocols::environment
• find_jump_number_at_suite() : protocols::stepwise::modeler
• find_ligands() : protocols::flxbb
• find_lowest_constraint_energy_residue() : protocols::protein_interface_design
• find_mover() : protocols::environment
• find_mover_or_die() : protocols::moves
• find_nearest_disulfide() : protocols::rosetta_scripts
• find_nearest_res() : protocols::rosetta_scripts
• find_nearest_residue() : protocols::protein_interface_design , protocols::seeded_abinitio
• find_nearest_residue_to_coord() : protocols::protein_interface_design::movers
• find_non_protein_chunks() : protocols::loops
• find_peptide_attach_pt() : protocols::ligand_docking
• find_regions_with_minimum_size() : protocols::nonlocal
• find_root_without_virtual_ribose() : protocols::stepwise::modeler
• find_sampling_cuts() : protocols::abinitio
• find_sheet() : protocols::features::strand_assembly
• find_unconnected_residues() : protocols::ligand_docking
• find_uncovered_residues() : protocols::hybridization
• FindConsensusSequenceCOP : protocols::simple_moves
• FindConsensusSequenceOP : protocols::simple_moves
• findLoopFromDensity() : protocols::electron_density
• findLoopFromPatterson() : protocols::electron_density
• FingerprintManagerCOP : protocols::pockets
• FingerprintManagerOP : protocols::pockets
• First : protocols::indexed_structure_store::filters
• fit_centered_coords() : protocols::toolbox
• FitSimpleHelixCOP : protocols::helical_bundle
• FitSimpleHelixCOPs : protocols::helical_bundle
• FitSimpleHelixOP : protocols::helical_bundle
• FitSimpleHelixOPs : protocols::helical_bundle
• FIVE_PRIME_PHOSPHATE : protocols::stepwise::modeler::rna::phosphate
• fix_chainbreak_patch() : protocols::abinitio
• fix_internal_coords_of_siblings() : protocols::abinitio::abscript , protocols::topology_broker
• fix_mainchain_connect() : protocols::abinitio::abscript , protocols::topology_broker
• fix_protein_jump_atom() : protocols::stepwise::modeler
• fix_tag_suffix() : protocols::toolbox
• fix_up_jump_atoms() : protocols::stepwise::modeler
• fix_up_jump_atoms_and_residue_type_variants() : protocols::stepwise::modeler
• fix_up_residue_type_variants() : protocols::stepwise::modeler
• fix_up_residue_type_variants_at_floating_base() : protocols::stepwise::modeler
• fix_up_residue_type_variants_at_strand_beginning() : protocols::stepwise::modeler
• fix_up_residue_type_variants_at_strand_end() : protocols::stepwise::modeler
• fix_with_coord_cst() : protocols::loops
• fix_worst_bad_ramas() : protocols::relax
• fixbb : protocols::antibody::design
• FIXED_DOMAIN : protocols::toolbox
• FixedOffsetPivotsCOP : protocols::kinematic_closure::pivot_pickers
• FixedOffsetPivotsOP : protocols::kinematic_closure::pivot_pickers
• FixedPivotsCOP : protocols::kinematic_closure::pivot_pickers
• FixedPivotsOP : protocols::kinematic_closure::pivot_pickers
• fixH() : protocols::forge::methods
• Flavodoxin : protocols::fldsgn::topology
• FlexbbInteractionGraphCOP : protocols::flexpack::interaction_graph
• FlexbbInteractionGraphOP : protocols::flexpack::interaction_graph
• FlexbbRotamerSetCOP : protocols::flexpack::rotamer_set
• FlexbbRotamerSetOP : protocols::flexpack::rotamer_set
• FlexbbRotamerSetsAP : protocols::flexpack::rotamer_set
• FlexbbRotamerSetsCAP : protocols::flexpack::rotamer_set
• FlexbbRotamerSetsCOP : protocols::flexpack::rotamer_set
• FlexbbRotamerSetsOP : protocols::flexpack::rotamer_set
• FlexbbSimAnnealerOP : protocols::flexpack::annealer
• FlexPackerCOP : protocols::flexpack
• FlexPackerOP : protocols::flexpack
• FlexPepDockingAbInitioCOP : protocols::flexpep_docking
• FlexPepDockingAbInitioOP : protocols::flexpep_docking
• FlexPepDockingFlagsAP : protocols::flexpep_docking
• FlexPepDockingFlagsCAP : protocols::flexpep_docking
• FlexPepDockingFlagsCOP : protocols::flexpep_docking
• FlexPepDockingFlagsOP : protocols::flexpep_docking
• FlexPepDockingLowResCOP : protocols::flexpep_docking
• FlexPepDockingLowResOP : protocols::flexpep_docking
• FlexPepDockingPoseMetricsCOP : protocols::flexpep_docking
• FlexPepDockingPoseMetricsOP : protocols::flexpep_docking
• FlexPepDockingProtocolCOP : protocols::flexpep_docking
• FlexPepDockingProtocolOP : protocols::flexpep_docking
• FLIP_CHIRALITY : protocols::simple_moves::chiral
• FlipMoverCOP : protocols::membrane
• FlipMoverOP : protocols::membrane
• FloatingResonanceAP : protocols::noesy_assign
• FloatingResonanceCAP : protocols::noesy_assign
• FloatingResonanceCOP : protocols::noesy_assign
• FloatingResonanceOP : protocols::noesy_assign
• flood_fill3D() : protocols::sic_dock
• FloppyTailMoverOP : protocols::floppy_tail
• flxbb : protocols::antibody::design
• FlxbbDesign_main() : protocols::flxbb
• FlxbbDesignOP : protocols::flxbb
• fold_tree_from_loops() : protocols::forge::methods , protocols::loops
• fold_tree_from_pose() : protocols::forge::methods
• FoldandDockClaimerAP : protocols::topology_broker
• FoldandDockClaimerCAP : protocols::topology_broker
• FoldandDockClaimerCOP : protocols::topology_broker
• FoldandDockClaimerOP : protocols::topology_broker
• FoldConstraintsCOP : protocols::abinitio
• FoldConstraintsOP : protocols::abinitio
• FoldTreeFromLoopsCOP : protocols::loops
• FoldTreeFromLoopsOP : protocols::loops
• FoldTreeHybridizeCOP : protocols::hybridization
• FoldTreeHybridizeOP : protocols::hybridization
• FoldTreeRequest : protocols::loop_modeling
• follow_EX_flags : protocols::match::upstream
• ForceDisulfideMoverCOP : protocols::simple_moves
• ForceDisulfideMoverOP : protocols::simple_moves
• foreach_movemap_tag() : protocols::rosetta_scripts
• FormatStringOutputterSP : protocols::outputter
• forward : protocols::loops::loop_closure::ccd
• FourAtomsConstraintDataCOP : protocols::frag_picker::scores
• FourAtomsConstraintDataOP : protocols::frag_picker::scores
• frac_atoms_within() : protocols::ligand_docking
• FragInsertAndAlignMoverOP : protocols::rbsegment_relax
• FragLibCOP : protocols::frags
• FragLibOP : protocols::frags
• FragmentCandidateCOP : protocols::frag_picker
• FragmentCandidateOP : protocols::frag_picker
• FragmentClaimerAP : protocols::topology_broker
• FragmentClaimerCAP : protocols::topology_broker
• FragmentClaimerCOP : protocols::topology_broker
• FragmentClaimerOP : protocols::topology_broker
• FragmentCMCOP : protocols::abinitio::abscript
• FragmentCMOP : protocols::abinitio::abscript
• FragmentComparatorBaseCOP : protocols::frag_picker
• FragmentComparatorBaseOP : protocols::frag_picker
• FragmentCostCOP : protocols::simple_moves
• FragmentCostOP : protocols::simple_moves
• FragmentJumpClaimerAP : protocols::topology_broker
• FragmentJumpClaimerCAP : protocols::topology_broker
• FragmentJumpClaimerCOP : protocols::topology_broker
• FragmentJumpClaimerOP : protocols::topology_broker
• FragmentJumpCMCOP : protocols::abinitio::abscript
• FragmentJumpCMOP : protocols::abinitio::abscript
• FragmentLibraryOP : protocols::farna
• FragmentLibraryPointerMap : protocols::farna
• FragmentLookupFilterAP : protocols::indexed_structure_store::filters
• FragmentLookupFilterCAP : protocols::indexed_structure_store::filters
• FragmentLookupFilterCOP : protocols::indexed_structure_store::filters
• FragmentLookupFilterOP : protocols::indexed_structure_store::filters
• FragmentMoverCOP : protocols::simple_moves
• FragmentMoverOP : protocols::simple_moves
• FragmentPerturberCOP : protocols::kinematic_closure::perturbers
• FragmentPerturberOP : protocols::kinematic_closure::perturbers
• FragmentPickerAP : protocols::frag_picker
• FragmentPickerCAP : protocols::frag_picker
• FragmentPickerCOP : protocols::frag_picker
• FragmentPickerOP : protocols::frag_picker
• FragmentReaderOP : protocols::jd2::parser
• FragmentSamplerCOP : protocols::abinitio
• FragmentSamplerOP : protocols::abinitio
• FragmentScoreManagerCOP : protocols::frag_picker::scores
• FragmentScoreManagerOP : protocols::frag_picker::scores
• FragmentScoreMapCOP : protocols::frag_picker::scores
• FragmentScoreMapOP : protocols::frag_picker::scores
• FragmentScoringMethodCOP : protocols::frag_picker::scores
• FragmentScoringMethodOP : protocols::frag_picker::scores
• FragmentSelectingRuleCOP : protocols::frag_picker
• FragmentSelectingRuleOP : protocols::frag_picker
• FragQualFilterCOP : protocols::fldsgn::filters
• FragQualFilterOP : protocols::fldsgn::filters
• FragsToAtomDistAP : protocols::noesy_assign
• FragsToAtomDistCAP : protocols::noesy_assign
• FragsToAtomDistCOP : protocols::noesy_assign
• FragsToAtomDistOP : protocols::noesy_assign
• framework_region : protocols::antibody
• freeze_sugar_torsions() : protocols::stepwise::modeler::rna
• FROM_SCRATCH : protocols::stepwise::monte_carlo
• FromScratchMoverCOP : protocols::stepwise::monte_carlo::mover
• FromScratchMoverOP : protocols::stepwise::monte_carlo::mover
• ftoa() : protocols::sparta
• FTR_DONT_CARE : protocols::loop_modeling
• FTR_LOOPS_WITH_CUTS : protocols::loop_modeling
• FTR_SIMPLE_TREE : protocols::loop_modeling
• full_hit() : protocols::match
• full_length_rmsd_over_residue_list() : protocols::stepwise::legacy::modeler::rna
• FullatomRelaxMoverOP : protocols::surface_docking
• FullModelInfoSetupFromCommandLineCOP : protocols::stepwise::setup
• FullModelInfoSetupFromCommandLineOP : protocols::stepwise::setup
• func_add_resid_to_entity_list : protocols::pack_daemon
• func_entity_for_residue : protocols::pack_daemon
• func_n_residues_for_entity : protocols::pack_daemon
• func_residues_for_entity_begin : protocols::pack_daemon
• func_residues_for_entity_end : protocols::pack_daemon