Here is a list of all namespace members with links to the namespace documentation for each member:

- b -

• B : protocols::comparative_modeling::features , protocols::features
• b : protocols::match::upstream
• BAB_CFr : protocols::fldsgn::topology
• BABx1 : protocols::fldsgn::topology
• BABx2 : protocols::fldsgn::topology
• BABx3 : protocols::fldsgn::topology
• BACKBONE : protocols::noesy_assign
• backbone_stub_match() : protocols::motifs
• BackboneIndexMap : protocols::loophash
• BackboneMoverCOP : protocols::simple_moves
• BackboneMoverOP : protocols::simple_moves
• backrub_rotation_angles() : protocols::backrub
• backrub_rotation_constants() : protocols::backrub
• BackrubMoverCOP : protocols::backrub
• BackrubMoverOP : protocols::backrub
• BackrubSidechainMoverCOP : protocols::backrub
• BackrubSidechainMoverOP : protocols::backrub
• backward : protocols::loops::loop_closure::ccd
• bad_anchorfile() : protocols::anchored_design
• BAD_INPUT : protocols::jd2
• BAD_INPUT_TAG : protocols::jd2
• bailout_mutex : protocols::boinc::watchdog
• bailout_silent_structure : protocols::boinc::watchdog
• bailout_silent_structure_header : protocols::boinc::watchdog
• BalancedKicMoverCOP : protocols::kinematic_closure
• BalancedKicMoverOP : protocols::kinematic_closure
• base_atoms_square_deviation() : protocols::stepwise::modeler::rna
• BASE_BIN_MAP : protocols::stepwise::screener
• BASE_CENTROID : protocols::stepwise::screener
• base_name() : protocols::vip
• BaseArchiveManagerAP : protocols::jd2::archive
• BaseBinMap : protocols::stepwise::modeler::rna::rigid_body
• BaseBinMapUpdaterCOP : protocols::stepwise::screener
• BaseBinMapUpdaterOP : protocols::stepwise::screener
• BaseCentroidScreenerCOP : protocols::stepwise::screener
• BaseCentroidScreenerOP : protocols::stepwise::screener
• BaseJobDistributorOP : protocols::jobdist
• BaseJumpSetupCOP : protocols::jumping
• BaseJumpSetupOP : protocols::jumping
• BasePairingLibraryCOP : protocols::jumping
• BasePairingLibraryOP : protocols::jumping
• BasePairStepCOP : protocols::farna
• BasePairStepLibraryCOP : protocols::farna
• BasePairStepLibraryOP : protocols::farna
• BasePairStepOP : protocols::farna
• BaseRoleSP : protocols::elscripts
• basic_idealize() : protocols::idealize
• BasicCDRClusterSetCOP : protocols::antibody::clusters
• BasicCDRClusterSetOP : protocols::antibody::clusters
• BasicJobCOP : protocols::jobdist
• BasicJobOP : protocols::jobdist
• BasicJumpClaimerAP : protocols::topology_broker
• BasicJumpClaimerCAP : protocols::topology_broker
• BasicJumpClaimerCOP : protocols::topology_broker
• BasicJumpClaimerOP : protocols::topology_broker
• BasicSimAnnealerRepackerCOP : protocols::pack_daemon
• BasicSimAnnealerRepackerOP : protocols::pack_daemon
• BATCH_SYNC : protocols::jd2::archive
• BatchFeaturesCOP : protocols::features
• BatchFeaturesOP : protocols::features
• BatchJobInputterOP : protocols::jd2
• BBClaimAP : protocols::topology_broker::claims
• BBClaimCAP : protocols::topology_broker::claims
• BBClaimCOP : protocols::topology_broker::claims
• BBClaimOP : protocols::topology_broker::claims
• BBConRotMoverCOP : protocols::simple_moves
• BBConRotMoverOP : protocols::simple_moves
• BBdisplayState : protocols::viewer::graphics_states_param
• BBG8T3AMoverCOP : protocols::simple_moves
• BBG8T3AMoverOP : protocols::simple_moves
• BBGaussianMoverCOP : protocols::simple_moves
• BBGaussianMoverOP : protocols::simple_moves
• BDR_AP : protocols::forge::components
• BDR_CAP : protocols::forge::components
• BDR_COP : protocols::forge::components
• BDR_OP : protocols::forge::components
• BEFr : protocols::fldsgn::topology
• best_bbcst_residues() : protocols::protein_interface_design
• best_cutpoint() : protocols::protein_interface_design
• BestMatchesCollectionCOP : protocols::match::output
• BestMatchesCollectionOP : protocols::match::output
• BestTotalScoreSelectorCOP : protocols::frag_picker
• BestTotalScoreSelectorOP : protocols::frag_picker
• BETA_NON_METHYL : protocols::noesy_assign
• BetaAlphaBetaMotifCOP : protocols::fldsgn::topology
• BetaAlphaBetaMotifOP : protocols::fldsgn::topology
• BetaAlphaBetaMotifs : protocols::fldsgn::topology
• BetaAlphaBetaMotifSetCOP : protocols::fldsgn::topology
• BetaAlphaBetaMotifSetOP : protocols::fldsgn::topology
• BetaTurnDetectionCOP : protocols::features
• BetaTurnDetectionFeaturesCOP : protocols::features
• BetaTurnDetectionFeaturesOP : protocols::features
• BetaTurnDetectionOP : protocols::features
• BFr : protocols::fldsgn::topology
• bgsh_delta_omega0 : protocols::helical_bundle
• bgsh_delta_omega1 : protocols::helical_bundle
• bgsh_delta_t : protocols::helical_bundle
• bgsh_omega0 : protocols::helical_bundle
• bgsh_r0 : protocols::helical_bundle
• bgsh_undefined_dof : protocols::helical_bundle
• BiasedFragmentMoverCOP : protocols::nonlocal
• BiasedFragmentMoverOP : protocols::nonlocal
• BiasedMonteCarloCOP : protocols::canonical_sampling
• BiasedMonteCarloOP : protocols::canonical_sampling
• BiasEnergyAP : protocols::canonical_sampling
• BiasEnergyCAP : protocols::canonical_sampling
• BiasEnergyCOP : protocols::canonical_sampling
• BiasEnergyOP : protocols::canonical_sampling
• BindingStrainFilterCOP : protocols::protein_interface_design::filters
• BindingStrainFilterOP : protocols::protein_interface_design::filters
• BluePrintBDR_AP : protocols::fldsgn
• BluePrintBDR_CAP : protocols::fldsgn
• BluePrintBDR_COP : protocols::fldsgn
• BluePrintBDR_OP : protocols::fldsgn
• BluePrintCOP : protocols::jd2::parser
• BluePrintOP : protocols::flxbb , protocols::jd2::parser
• BOGUS_ASSIGNMENT : protocols::noesy_assign
• BoincCurrentPoseObserverOP : protocols::boinc
• boincOutputFilter() : protocols::boinc
• Boltzmann : protocols::md
• boltzmann_energy_selector : protocols::generalized_kinematic_closure::selector
• BoltzmannFilterCOP : protocols::protein_interface_design::filters
• BoltzmannFilterOP : protocols::protein_interface_design::filters
• BoltzmannRotamerMoverCOP : protocols::simple_moves
• BoltzmannRotamerMoverOP : protocols::simple_moves
• bond_angles() : protocols::environment
• bond_lengths() : protocols::environment
• BOND_TO_NEXT : protocols::stepwise::monte_carlo
• BOND_TO_PREVIOUS : protocols::stepwise::monte_carlo
• bond_torsions() : protocols::environment
• BondAngleDatabaseOP : protocols::features
• BondAnglePerturberCOP : protocols::kinematic_closure::perturbers
• BondAnglePerturberOP : protocols::kinematic_closure::perturbers
• Bool3DGridCOP : protocols::match
• Bool3DGridOP : protocols::match
• boolean_operations : protocols::filters , protocols::toolbox::task_operations
• BOOLEAN_OR : protocols::simple_filters
• bools_from_sizes() : protocols::motifs
• bounded_loops_from_alignment() : protocols::comparative_modeling
• BoundedQuotaContainer : protocols::frag_picker::quota
• BoundedQuotaContainerOP : protocols::frag_picker::quota
• BoundingBox : protocols::loophash
• bpdefs2map() : protocols::motifs
• bpybb() : protocols::sic_dock::scores
• branching_atomid1() : protocols::branch_angle
• branching_atomids2() : protocols::branch_angle
• BridgeAP : protocols::forge::build
• BridgeCAP : protocols::forge::build
• BridgeCOP : protocols::forge::build
• BridgeOP : protocols::forge::build
• Broker_main() : protocols::abinitio
• brute_mindis() : protocols::sic_dock
• build_and_score_disulfide() : protocols::forge::remodel
• build_full_model() : protocols::stepwise::monte_carlo
• build_rotamers_lite() : protocols::motifs
• BuildAlaPoseCOP : protocols::protein_interface_design::movers
• BuildAlaPoseOP : protocols::protein_interface_design::movers
• BuildingBlockInterfaceOperationCOP : protocols::matdes
• BuildingBlockInterfaceOperationOP : protocols::matdes
• BuildInstructionAP : protocols::forge::build
• BuildInstructionCAP : protocols::forge::build
• BuildInstructionCOP : protocols::forge::build
• BuildInstructionOP : protocols::forge::build
• BuildManagerAP : protocols::forge::build
• BuildManagerCAP : protocols::forge::build
• BuildManagerCOP : protocols::forge::build
• BuildManagerOP : protocols::forge::build
• BuildPositionCOP : protocols::motifs
• BuildPositionCOPs : protocols::motifs
• BuildPositionOP : protocols::motifs
• BuildPositionOPs : protocols::motifs
• BULGE_APPLIER : protocols::stepwise::screener
• BulgeApplierCOP : protocols::stepwise::screener
• BulgeApplierOP : protocols::stepwise::screener
• BulgeApplyMoverCOP : protocols::stepwise::modeler::rna::bulge
• BulgeApplyMoverOP : protocols::stepwise::modeler::rna::bulge
• BulgeUnApplyMoverCOP : protocols::stepwise::modeler::rna::bulge
• BulgeUnApplyMoverOP : protocols::stepwise::modeler::rna::bulge
• bump_grid_to_enclose_pose() : protocols::match
• bump_grid_to_enclose_residue() : protocols::match
• bump_grid_to_enclose_residue_backbone() : protocols::match
• BumpGridCOP : protocols::match
• BumpGridOP : protocols::match
• BundleGridSamplerCOP : protocols::helical_bundle
• BundleGridSamplerCOPs : protocols::helical_bundle
• BundleGridSamplerHelperAP : protocols::helical_bundle
• BundleGridSamplerHelperCAP : protocols::helical_bundle
• BundleGridSamplerHelperCAPs : protocols::helical_bundle
• BundleGridSamplerHelperCOP : protocols::helical_bundle
• BundleGridSamplerHelperCOPs : protocols::helical_bundle
• BundleGridSamplerHelperOP : protocols::helical_bundle
• BundleGridSamplerHelperOPs : protocols::helical_bundle
• BundleGridSamplerOP : protocols::helical_bundle
• BundleGridSamplerOPs : protocols::helical_bundle
• BundleParametersAP : protocols::helical_bundle::parameters
• BundleParametersCAP : protocols::helical_bundle::parameters
• BundleParametersCAPs : protocols::helical_bundle::parameters
• BundleParametersCOP : protocols::helical_bundle::parameters
• BundleParametersCOPs : protocols::helical_bundle::parameters
• BundleParametersOP : protocols::helical_bundle::parameters
• BundleParametersOPs : protocols::helical_bundle::parameters
• BundleParametersSetAP : protocols::helical_bundle::parameters
• BundleParametersSetCAP : protocols::helical_bundle::parameters
• BundleParametersSetCAPs : protocols::helical_bundle::parameters
• BundleParametersSetCOP : protocols::helical_bundle::parameters
• BundleParametersSetCOPs : protocols::helical_bundle::parameters
• BundleParametersSetOP : protocols::helical_bundle::parameters
• BundleParametersSetOPs : protocols::helical_bundle::parameters
• buried_unsat_hbond_filter_tracer() : protocols::simple_filters