Here is a list of all namespace members with links to the namespace documentation for each member:

- s -

• sa_faraggi_max() : protocols::frag_picker
• safe_secstruct() : protocols::jumping
• safe_set_conf() : protocols::environment
• safe_set_extended_torsions_and_idealize_loops() : protocols::loops
• SaltBridgeFeaturesCOP : protocols::features
• SaltBridgeFeaturesOP : protocols::features
• SameChiBinComboGrouperCOP : protocols::match::output
• SameChiBinComboGrouperOP : protocols::match::output
• SameRotamerComboGrouperCOP : protocols::match::output
• SameRotamerComboGrouperOP : protocols::match::output
• SameSequenceAndDSPositionGrouperCOP : protocols::match::output
• SameSequenceAndDSPositionGrouperOP : protocols::match::output
• SameSequenceGrouperCOP : protocols::match::output
• SameSequenceGrouperOP : protocols::match::output
• SameStrandCOP : protocols::jumping
• SameStrandOP : protocols::jumping
• sample_all_rotations_at_jump() : protocols::toolbox::sample_around
• SAMPLE_APPLIER : protocols::stepwise::screener
• SAMPLE_APPLIER_WITH_RESIDUE_LIST : protocols::stepwise::screener
• sample_cis_peptide_bond : protocols::generalized_kinematic_closure::perturber
• SampleApplierCOP : protocols::stepwise::screener
• SampleApplierOP : protocols::stepwise::screener
• SandwichFeaturesCOP : protocols::features::strand_assembly
• SandwichFeaturesOP : protocols::features::strand_assembly
• SaneDockingProtocolOP : protocols::docking::stateless
• SaneMinMoverCOP : protocols::simple_moves
• SaneMinMoverOP : protocols::simple_moves
• SaveAndRetrieveSidechainsCOP : protocols::protein_interface_design::movers
• SaveAndRetrieveSidechainsOP : protocols::protein_interface_design::movers
• saved_reference_pose() : protocols::rosetta_scripts
• SavePoseMoverCOP : protocols::rosetta_scripts
• SavePoseMoverOP : protocols::rosetta_scripts
• SaveResfileToDiskFilterCOP : protocols::simple_filters
• SaveResfileToDiskFilterOP : protocols::simple_filters
• SAXSScoreFilterCOP : protocols::simple_filters
• SAXSScoreFilterOP : protocols::simple_filters
• ScaffoldBuildPointCOP : protocols::match::upstream
• ScaffoldBuildPointOP : protocols::match::upstream
• SCdisplayState : protocols::viewer::graphics_states_param
• SchemePlaceMotifsMoverCOP : protocols::matdes
• SchemePlaceMotifsMoverOP : protocols::matdes
• score_cst() : protocols::abinitio::abscript
• SCORE_FRAG_STORE : protocols::loops::loop_closure::ccd
• score_sort_criterion() : protocols::stepwise::modeler::rna
• score_type_filter_tracer() : protocols::simple_filters
• ScoreCutoffFilterCOP : protocols::simple_filters
• ScoreCutoffFilterOP : protocols::simple_filters
• ScoredCandidate : protocols::frag_picker
• ScoredCandidatesVector1 : protocols::frag_picker
• ScoreFunctionFeaturesCOP : protocols::features
• ScoreFunctionFeaturesOP : protocols::features
• scorefxn_update_from_options() : protocols::enzdes::enzutil
• ScoreList : protocols::nonlocal , protocols::simple_moves
• ScoreMap : protocols::qsar::scoring_grid
• ScoreMoverCOP : protocols::simple_moves
• ScoreMoverOP : protocols::simple_moves
• ScoreNormalizationCOP : protocols::qsar::scoring_grid
• ScoreNormalizationOP : protocols::qsar::scoring_grid
• SCORER : protocols::stepwise::screener
• ScorerCOP : protocols::stepwise::screener
• ScorerOP : protocols::stepwise::screener
• Scores : protocols::sic_dock , protocols::sic_dock::scores
• ScoreTypeFeaturesCOP : protocols::features
• ScoreTypeFeaturesOP : protocols::features
• ScoringGridLoaderCOP : protocols::qsar::scoring_grid
• ScoringGridLoaderOP : protocols::qsar::scoring_grid
• ScoringSecMatchRPECOP : protocols::match::downstream
• ScoringSecMatchRPEOP : protocols::match::downstream
• SCREENING_FILE : protocols::jd2::JobInputterInputSource
• ScreeningFeaturesCOP : protocols::features
• ScreeningFeaturesOP : protocols::features
• ScreeningJobInputterOP : protocols::jd2
• ScriptCMCOP : protocols::environment
• ScriptCMOP : protocols::environment
• SearchPatternCOP : protocols::hotspot_hashing
• SearchPatternOP : protocols::hotspot_hashing
• SearchPatternRotSetOpCOP : protocols::hotspot_hashing
• SearchPatternRotSetOpOP : protocols::hotspot_hashing
• SecMatchResiduePairEvaluatorCOP : protocols::match::downstream
• SecMatchResiduePairEvaluatorOP : protocols::match::downstream
• SecondaryMatcherToDownstreamResidueCOP : protocols::match::downstream
• SecondaryMatcherToDownstreamResidueOP : protocols::match::downstream
• SecondaryMatcherToUpstreamResidueCOP : protocols::match::downstream
• SecondaryMatcherToUpstreamResidueOP : protocols::match::downstream
• SecondaryMatchProtocolCAP : protocols::enzdes
• SecondaryMatchProtocolCOP : protocols::enzdes
• SecondaryMatchProtocolOP : protocols::enzdes
• SecondaryMatchUpstreamResProcessorCOP : protocols::match::downstream
• SecondaryMatchUpstreamResProcessorOP : protocols::match::downstream
• SecondarySimilarityCOP : protocols::frag_picker::scores
• SecondarySimilarityOP : protocols::frag_picker::scores
• SecondaryStructureCountFilterCOP : protocols::fldsgn::filters
• SecondaryStructureCountFilterOP : protocols::fldsgn::filters
• SecondaryStructureFilterCOP : protocols::fldsgn::filters
• SecondaryStructureFilterOP : protocols::fldsgn::filters
• SecondaryStructureHasResidueFilterCOP : protocols::fldsgn::filters
• SecondaryStructureHasResidueFilterOP : protocols::fldsgn::filters
• SecondaryStructurePoolCOP : protocols::frag_picker::quota
• SecondaryStructurePoolOP : protocols::frag_picker::quota
• SecondaryStructureType : protocols::loops::loop_closure::ccd
• section() : protocols::sparta
• see_edge_or_core_or_loop_or_short_edge() : protocols::features::strand_assembly
• see_whether_sheet_is_antiparallel() : protocols::features::strand_assembly
• see_whether_sheets_can_be_combined() : protocols::features::strand_assembly
• see_whether_this_sw_has_SS_bond() : protocols::features::strand_assembly
• SeedFoldTreeCOP : protocols::seeded_abinitio
• SeedFoldTreeOP : protocols::seeded_abinitio
• SegmentInsertAP : protocols::forge::build
• SegmentInsertCAP : protocols::forge::build
• SegmentInsertCOP : protocols::forge::build
• SegmentInsertOP : protocols::forge::build
• SegmentRebuildAP : protocols::forge::build
• SegmentRebuildCAP : protocols::forge::build
• SegmentRebuildCOP : protocols::forge::build
• SegmentRebuildOP : protocols::forge::build
• SegmentSwapAP : protocols::forge::build
• SegmentSwapCAP : protocols::forge::build
• SegmentSwapCOP : protocols::forge::build
• SegmentSwapOP : protocols::forge::build
• select_best_poses() : protocols::ligand_docking
• select_epitope_residues() : protocols::antibody
• select_interface_residues() : protocols::interface
• select_loop_frags() : protocols::loops
• select_loop_residues() : protocols::loops
• select_RBsegments() : protocols::rbsegment_relax
• SelectByDeltaScoreOperationOP : protocols::toolbox::task_operations
• SelectByDensityFitOperationCOP : protocols::toolbox::task_operations
• SelectByDensityFitOperationOP : protocols::toolbox::task_operations
• SelectBySASAOperationCOP : protocols::toolbox::task_operations
• SelectBySASAOperationOP : protocols::toolbox::task_operations
• selector_type : protocols::generalized_kinematic_closure::selector
• SelectRDC_EvaluatorCOP : protocols::simple_filters
• SelectRDC_EvaluatorOP : protocols::simple_filters
• SelectResiduesByLayerOP : protocols::toolbox
• SelectResiduesWithinChainOperationCOP : protocols::toolbox::task_operations
• SelectResiduesWithinChainOperationOP : protocols::toolbox::task_operations
• SeparateDnaFromNonDnaCOP : protocols::dna
• SeparateDnaFromNonDnaOP : protocols::dna
• seq_design_basic : protocols::antibody::design
• seq_design_conservative : protocols::antibody::design
• seq_design_profiles : protocols::antibody::design
• seq_num_sort_criterion() : protocols::stepwise::modeler::rna
• seq_pdb_str() : protocols::dna
• seq_to_str() : protocols::dna
• SeqDesignStrategyEnum : protocols::antibody::design
• SeqDesignStrategyEnum_total : protocols::antibody::design
• SeqprofConsensusOperationOP : protocols::toolbox::task_operations
• sequencealign() : protocols::frag_picker::scores
• SequenceClaimAP : protocols::topology_broker::claims
• SequenceClaimCAP : protocols::topology_broker::claims
• SequenceClaimCOP : protocols::topology_broker::claims
• SequenceClaimerAP : protocols::topology_broker
• SequenceClaimerCAP : protocols::topology_broker
• SequenceClaimerCOP : protocols::topology_broker
• SequenceClaimerOP : protocols::topology_broker
• SequenceClaimOP : protocols::topology_broker::claims
• SequenceClaims : protocols::topology_broker::claims
• SequenceCoupling1BDConstraintCOP : protocols::constraints_additional
• SequenceCoupling1BDConstraintOP : protocols::constraints_additional
• SequenceCouplingConstraintCOP : protocols::constraints_additional
• SequenceCouplingConstraintOP : protocols::constraints_additional
• SequenceMoverCOP : protocols::moves
• SequenceMoverOP : protocols::moves
• SequenceNumberResolverAP : protocols::topology_broker
• SequenceNumberResolverCAP : protocols::topology_broker
• SequenceNumberResolverCOP : protocols::topology_broker
• SequenceNumberResolverOP : protocols::topology_broker
• SequenceProfileMoverCOP : protocols::simple_moves
• SequenceProfileMoverOP : protocols::simple_moves
• SequenceRecoveryFilterCOP : protocols::protein_interface_design::filters
• SequenceRecoveryFilterOP : protocols::protein_interface_design::filters
• SequenceScores : protocols::dna
• SequenceSecStructPair : protocols::coarse_rna , protocols::farna
• SequentialSymmetrySliderCOP : protocols::simple_moves::symmetry
• SequentialSymmetrySliderOP : protocols::simple_moves::symmetry
• SerializableState : protocols::moves
• SerializableState_get() : protocols::moves
• SerializableState_set() : protocols::moves
• SerializableStateCSP : protocols::moves
• SerializableStateCWP : protocols::moves
• SerializableStateSP : protocols::moves
• SerializableStateWP : protocols::moves
• serialize_ids() : protocols::features
• serialize_residue_xyz_coords() : protocols::features
• SerializedLoopList : protocols::loops
• set_base_segment_chainbreak_constraints() : protocols::dna
• set_bg_color() : protocols::viewer
• set_bondangle : protocols::generalized_kinematic_closure::perturber
• set_bondlength : protocols::generalized_kinematic_closure::perturber
• set_CCD_torsions_to_zero() : protocols::stepwise::modeler::rna
• set_constraints() : protocols::rbsegment_relax
• set_difference() : protocols::stepwise::modeler::rna
• set_dihedral : protocols::generalized_kinematic_closure::perturber
• set_extended_torsions() : protocols::loops
• set_extended_torsions_and_idealize_loops() : protocols::loops
• set_jumps() : protocols::ligand_docking
• set_local_movemap() : protocols::vip
• set_loop_cutpoint_in_pose_fold_tree() : protocols::loops
• set_loop_pose() : protocols::generalized_kinematic_closure
• set_move_map_for_centroid_loop() : protocols::loops
• set_native_in_mover() : protocols::jd2
• set_nucleotide_to_A_form() : protocols::stepwise::legacy::modeler::rna
• set_output_res_num() : protocols::farna
• set_pose_and_scorefxn_for_edens_scoring() : protocols::electron_density
• set_protocol_and_batch_id() : protocols::features
• set_rb_constraints() : protocols::rbsegment_relax
• set_repulsive_bb_cores() : protocols::ligand_docking
• set_rna_secstruct() : protocols::farna
• set_scorefxn_from_tag() : protocols::loop_modeling::utilities
• set_secstruct_from_dssp() : protocols::loops
• set_secstruct_from_psipred_ss2() : protocols::loops
• set_single_loop_fold_tree() : protocols::forge::methods , protocols::loops
• set_sphere() : protocols::ligand_docking
• set_task_factory_from_tag() : protocols::loop_modeling::utilities
• set_to_origin() : protocols::toolbox::rigid_body
• set_union() : protocols::stepwise::modeler::rna
• set_xyz_coord() : protocols::fibril
• SetAACompositionPotential_AP : protocols::fldsgn
• SetAACompositionPotential_CAP : protocols::fldsgn
• SetAACompositionPotential_COP : protocols::fldsgn
• SetAACompositionPotential_OP : protocols::fldsgn
• SetCatalyticResPackBehaviorCOP : protocols::enzdes
• SetCatalyticResPackBehaviorOP : protocols::enzdes
• SetChiMoverCOP : protocols::simple_moves::sidechain_moves
• SetChiMoverOP : protocols::simple_moves::sidechain_moves
• SetIGTypeOperationCOP : protocols::toolbox::task_operations
• SetIGTypeOperationOP : protocols::toolbox::task_operations
• SetMembraneCenterMoverCOP : protocols::membrane
• SetMembraneCenterMoverOP : protocols::membrane
• SetMembraneNormalMoverCOP : protocols::membrane
• SetMembraneNormalMoverOP : protocols::membrane
• SetMembranePositionMoverCOP : protocols::membrane
• SetMembranePositionMoverOP : protocols::membrane
• SetReturningPackRotamersMoverCOP : protocols::simple_moves
• SetReturningPackRotamersMoverOP : protocols::simple_moves
• SetSecStructEnergies_AP : protocols::fldsgn::potentials
• SetSecStructEnergies_CAP : protocols::fldsgn::potentials
• SetSecStructEnergies_COP : protocols::fldsgn::potentials
• SetSecStructEnergies_OP : protocols::fldsgn::potentials
• SetTemperatureFactorCOP : protocols::protein_interface_design::movers
• SetTemperatureFactorOP : protocols::protein_interface_design::movers
• SetTorsionCOP : protocols::simple_moves
• SetTorsionOP : protocols::simple_moves
• setup_A_LH_foldtree() : protocols::antibody
• setup_atom_pair_constraints() : protocols::medal
• setup_base_pair_constraints() : protocols::farna
• setup_bulge_jump_point() : protocols::stepwise::legacy::modeler::rna
• setup_centroid_constraints() : protocols::hybridization
• setup_chain_break_jump_point() : protocols::stepwise::legacy::modeler::rna
• setup_chain_break_variants() : protocols::stepwise::modeler::rna
• setup_coarse_chainbreak_constraints() : protocols::farna
• setup_conformer_map() : protocols::motifs
• setup_constraints() : protocols::medal , protocols::star
• setup_convergence_checks_from_cmdline() : protocols::canonical_sampling::mc_convergence_checks
• setup_coordinate_constraints() : protocols::medal
• setup_copy_DOF_input() : protocols::stepwise::legacy::modeler::rna
• setup_disconnected() : protocols::rbsegment_relax
• setup_dme_point_graph() : protocols::simple_moves
• setup_faraggi_map() : protocols::frag_picker
• setup_fold_trees() : protocols::stepwise::setup
• setup_foldtree() : protocols::docking
• setup_for_dna() : protocols::relax
• setup_fullatom_constraints() : protocols::hybridization
• setup_interface_atompair_constraints() : protocols::hybridization
• setup_interface_coordinate_constraints() : protocols::hybridization
• setup_jumps() : protocols::stepwise::setup
• setup_LH_A_foldtree() : protocols::antibody
• setup_membrane_topology() : protocols::relax
• setup_name2type() : protocols::frag_picker
• setup_packer() : protocols::mpi_refinement
• setup_packer_task() : protocols::antibody
• setup_pose_from_rbsegs() : protocols::rbsegment_relax
• setup_pose_input_stream() : protocols::stepwise::modeler::protein
• setup_pose_rbsegs_keep_loops() : protocols::rbsegment_relax
• setup_pose_setup_class() : protocols::stepwise::legacy::modeler::rna
• setup_pose_with_moving_residue_alternative_list() : protocols::stepwise::modeler::rna::rigid_body
• setup_protein_backbone_atom_id_map() : protocols::stepwise::modeler::protein
• setup_rna_working_parameters() : protocols::stepwise::legacy::modeler::rna
• setup_sampler() : protocols::stepwise::sampler::rna
• setup_score() : protocols::abinitio::abscript , protocols::star
• setup_simple_fold_tree() : protocols::stepwise::legacy::modeler::rna
• setup_simple_full_length_rna_working_parameters() : protocols::stepwise::legacy::modeler::rna
• setup_single_loop_double_arm_remodeling_foldtree() : protocols::grafting
• setup_single_loop_single_arm_remodeling_foldtree() : protocols::grafting
• setup_star_topology() : protocols::rbsegment_relax
• setup_suite_atom_id_map() : protocols::stepwise::modeler::rna
• setup_three_prime_phosphate_based_on_next_residue() : protocols::stepwise::modeler::rna::phosphate
• setup_type2name() : protocols::frag_picker
• setup_user_coordinate_constraints() : protocols::hybridization
• setup_user_defined_jumps() : protocols::stepwise::setup
• setup_vall_cheating_fragments() : protocols::frags
• setup_vall_fragments() : protocols::frags
• setup_vary_polar_hydrogen_geometry() : protocols::simple_moves
• setup_vary_rna_bond_geometry() : protocols::simple_moves
• setup_working_parameters_explicit() : protocols::stepwise::modeler::working_parameters
• setup_working_parameters_for_swa() : protocols::stepwise::modeler::working_parameters
• SetupForDensityScoringMoverOP : protocols::electron_density
• SetupForFibrilMoverCOP : protocols::fibril
• SetupForFibrilMoverOP : protocols::fibril
• SetupForSymmetryMoverCOP : protocols::simple_moves::symmetry
• SetupForSymmetryMoverOP : protocols::simple_moves::symmetry
• SetupHotspotConstraintsLoopsMoverCOP : protocols::protein_interface_design::movers
• SetupHotspotConstraintsLoopsMoverOP : protocols::protein_interface_design::movers
• SetupHotspotConstraintsMoverCOP : protocols::protein_interface_design::movers
• SetupHotspotConstraintsMoverOP : protocols::protein_interface_design::movers
• SetupNCSMoverCOP : protocols::simple_moves::symmetry
• SetupNCSMoverOP : protocols::simple_moves::symmetry
• SetupPB : protocols::pb_potential
• SetupPBCreator : protocols::pb_potential
• SF_ReplicaCOP : protocols::toolbox
• SF_ReplicaOP : protocols::toolbox
• ShakeStructureMoverCOP : protocols::simple_moves
• ShakeStructureMoverOP : protocols::simple_moves
• ShapeComplementarityFilterCOP : protocols::simple_filters
• ShapeComplementarityFilterOP : protocols::simple_filters
• ShearMinCCDTrialCOP : protocols::loops::loop_mover::refine
• ShearMinCCDTrialOP : protocols::loops::loop_mover::refine
• ShearMoverCOP : protocols::simple_moves
• ShearMoverOP : protocols::simple_moves
• SheetConstraintsRCGOP : protocols::fldsgn
• SheetCOP : protocols::fldsgn::topology
• SheetFoldType : protocols::fldsgn::topology
• SheetFoldTypes : protocols::fldsgn::topology
• SheetOP : protocols::fldsgn::topology
• Sheets : protocols::fldsgn::topology
• SheetSetCOP : protocols::fldsgn::topology
• SheetSetOP : protocols::fldsgn::topology
• SheetTopologyFilterCOP : protocols::fldsgn::filters
• SheetTopologyFilterOP : protocols::fldsgn::filters
• SheetTranslateCOP : protocols::nonlocal
• SheetTranslateOP : protocols::nonlocal
• shift_jumps() : protocols::forge::methods
• ShortBackrubMoverCOP : protocols::simple_moves
• ShortBackrubMoverOP : protocols::simple_moves
• ShortLoopClosureCOP : protocols::loops::loop_closure::ccd
• ShortLoopClosureOP : protocols::loops::loop_closure::ccd
• ShortToRealAngle() : protocols::loophash
• SHOW_ALL_TRIALS : protocols::viewer::graphics_states_param
• SHOW_BACKBONE : protocols::viewer::graphics_states_param
• SHOW_BEST : protocols::viewer::graphics_states_param
• SHOW_CARTOON : protocols::viewer::graphics_states_param
• SHOW_H : protocols::viewer::graphics_states_param
• SHOW_LOW : protocols::viewer::graphics_states_param
• SHOW_MC_TRIALS : protocols::viewer::graphics_states_param
• SHOW_NO_H : protocols::viewer::graphics_states_param
• SHOW_NOBB : protocols::viewer::graphics_states_param
• SHOW_NOSC : protocols::viewer::graphics_states_param
• show_scorefxn_weight_lines() : protocols::stepwise::modeler::rna
• SHOW_STICK : protocols::viewer::graphics_states_param
• SHOW_WIREFRAME : protocols::viewer::graphics_states_param
• ShowHState : protocols::viewer::graphics_states_param
• SICFastCOP : protocols::sic_dock
• SICFastOP : protocols::sic_dock
• side1 : protocols::analysis
• side2 : protocols::analysis
• SIDECHAIN : protocols::noesy_assign
• sidechain_rmsd_filter_tracer() : protocols::simple_filters
• SidechainContactDistCutoffCOP : protocols::frag_picker
• SidechainContactDistCutoffOP : protocols::frag_picker
• SideChainCopierCOP : protocols::stepwise::modeler::packer
• SideChainCopierOP : protocols::stepwise::modeler::packer
• SidechainMCMoverCOP : protocols::simple_moves::sidechain_moves
• SidechainMCMoverOP : protocols::simple_moves::sidechain_moves
• SidechainMinMoverCOP : protocols::docking
• SidechainMinMoverOP : protocols::docking
• SidechainMoverBaseCOP : protocols::simple_moves::sidechain_moves
• SidechainMoverBaseOP : protocols::simple_moves::sidechain_moves
• SidechainMoverCOP : protocols::simple_moves::sidechain_moves
• SidechainMoverOP : protocols::simple_moves::sidechain_moves
• sigmoid() : protocols::noesy_assign
• SigmoidCOP : protocols::simple_filters
• SigmoidOP : protocols::simple_filters
• SILENT_FILE : protocols::jd2::JobInputterInputSource
• silent_observers : protocols::viewer
• SilentFileInputterSP : protocols::inputter
• SilentFileJobInputterOP : protocols::jd2
• SilentFileJobOutputterOP : protocols::jd2
• SilentFileOutputterSP : protocols::outputter
• SilentObserverOP : protocols::viewer
• SilentStructStoreCOP : protocols::wum
• SilentStructStoreOP : protocols::wum
• SilentTrajectoryRecorderOP : protocols::canonical_sampling
• simple_fold_tree() : protocols::antibody , protocols::antibody_legacy , protocols::star
• simple_one_loop_fold_tree() : protocols::antibody , protocols::antibody_legacy
• SIMPLE_POSE_SELECTION : protocols::stepwise::screener
• SIMPLE_RMSD : protocols::stepwise::screener
• SimplePoseSelectionCOP : protocols::stepwise::legacy::screener
• SimplePoseSelectionOP : protocols::stepwise::legacy::screener
• SimpleRMSD_ScreenerCOP : protocols::stepwise::legacy::screener
• SimpleRMSD_ScreenerOP : protocols::stepwise::legacy::screener
• SimpleTreeBuilderCOP : protocols::nonlocal
• SimpleTreeBuilderOP : protocols::nonlocal
• simplifyWhiteSpace() : protocols::sparta
• SimulatedTemperingCOP : protocols::canonical_sampling
• SimulatedTemperingOP : protocols::canonical_sampling , protocols::moves
• single_ligand_motif_from_stream() : protocols::motifs
• single_motif_from_filename() : protocols::motifs
• single_motif_from_stream() : protocols::motifs
• single_residue_from_stream() : protocols::motifs
• SingleDownstreamResidueWriterCOP : protocols::match::output
• SingleDownstreamResidueWriterOP : protocols::match::output
• SingleFileBufferCOP : protocols::jd2
• SingleFileBufferOP : protocols::jd2
• SingleFragmentMoverCOP : protocols::nonlocal
• SingleFragmentMoverOP : protocols::nonlocal
• SingleGridCOP : protocols::qsar::scoring_grid
• SingleGridOP : protocols::qsar::scoring_grid
• SingleLoopMoverCOP : protocols::loops::loop_mover
• SingleLoopMoverOP : protocols::loops::loop_mover
• SingleMotifCOP : protocols::motifs
• SingleMotifCOPs : protocols::motifs
• SingleMotifOP : protocols::motifs
• SingleMotifOPs : protocols::motifs
• SingleNodeSP : protocols::elscripts
• SingleResidueInvrotTargetCOP : protocols::toolbox::match_enzdes_util
• SingleResidueInvrotTargetOP : protocols::toolbox::match_enzdes_util
• SingleResidueTorsionFragmentLibraryOP : protocols::frags
• SingleStateCOP : protocols::multistate_design
• SingleStateCOPs : protocols::multistate_design
• SingleStateFitnessFunctionCOP : protocols::multistate_design
• SingleStateFitnessFunctionOP : protocols::multistate_design
• SingleStateOP : protocols::multistate_design
• SingleStateOPs : protocols::multistate_design
• SingleStructureDataCOP : protocols::optimize_weights
• SingleStructureDataOP : protocols::optimize_weights
• SingleStructureDataOPs : protocols::optimize_weights
• Size : protocols::fldsgn::potentials::sspot , protocols::flxbb , protocols::hotspot_hashing , protocols::pb_potential , protocols::sic_dock::scores , protocols::sic_dock
• Size3 : protocols::match
• Size4 : protocols::match
• SIZED : protocols::stepwise::sampler
• SIZED_ANY : protocols::stepwise::sampler
• SIZED_COMB : protocols::stepwise::sampler
• SizeList : protocols::abinitio , protocols::noesy_assign
• Sizes : protocols::frags , protocols::kinmatch , protocols::sic_dock::scores , protocols::sic_dock
• skip_rate : protocols::loops
• SlaveSP : protocols::elscripts
• sleep() : protocols::stepwise::modeler::rna
• slice() : protocols::stepwise::modeler
• slice_out_pose() : protocols::stepwise::modeler
• slide_into_contact_and_score() : protocols::sic_dock
• slide_into_contact_and_score_DEPRICATED() : protocols::sic_dock
• slide_together_tracer() : protocols::ligand_docking
• SlidingWindowLoopClosureCOP : protocols::loops::loop_closure::ccd
• SlidingWindowLoopClosureOP : protocols::loops::loop_closure::ccd
• SmallFragWeightAP : protocols::topology_broker::weights
• SmallFragWeightCAP : protocols::topology_broker::weights
• SmallFragWeightCOP : protocols::topology_broker::weights
• SmallFragWeightOP : protocols::topology_broker::weights
• smallmer_from_largemer() : protocols::forge::methods
• SmallMinCCDTrialCOP : protocols::loops::loop_mover::refine
• SmallMinCCDTrialOP : protocols::loops::loop_mover::refine
• SmallMoveKinematicPerturberCOP : protocols::loops::loop_closure::kinematic_closure
• SmallMoveKinematicPerturberOP : protocols::loops::loop_closure::kinematic_closure
• SmallMoverCOP : protocols::simple_moves
• SmallMoverOP : protocols::simple_moves
• SmoothFragmentMoverCOP : protocols::simple_moves
• SmoothFragmentMoverOP : protocols::simple_moves
• SmoothFragWeightAP : protocols::topology_broker::weights
• SmoothFragWeightCAP : protocols::topology_broker::weights
• SmoothFragWeightCOP : protocols::topology_broker::weights
• SmoothFragWeightOP : protocols::topology_broker::weights
• SnugDockCOP : protocols::antibody
• SnugDockOP : protocols::antibody
• SnugDockProtocolCOP : protocols::antibody
• SnugDockProtocolOP : protocols::antibody
• SolutionList : protocols::kinematic_closure
• SolutionPickerCOP : protocols::kinematic_closure::solution_pickers
• SolutionPickerOP : protocols::kinematic_closure::solution_pickers
• SolvationGridCOP : protocols::qsar::scoring_grid
• SolvationGridOP : protocols::qsar::scoring_grid
• sort_by_length() : protocols::fldsgn::topology
• sort_copy_dofs() : protocols::stepwise::modeler::rna
• sort_function() : protocols::frag_picker
• sort_numerically_ascending() : protocols::ddg
• sort_pair_list() : protocols::stepwise::legacy::modeler::rna
• sort_PoseWithScore() : protocols::abinitio
• sort_scores() : protocols::frag_picker::scores
• sort_seq_num_list() : protocols::stepwise::modeler::rna
• SourcePositionsOP : protocols::coarse_rna
• sp_parse_taskdef() : protocols::elscripts
• SpanFileLoaderCOP : protocols::membrane::io
• SpanFileLoaderOP : protocols::membrane::io
• SpanFileOptionsCOP : protocols::membrane::io
• SpanFileOptionsOP : protocols::membrane::io
• SpecialRotamerEnergyOP : protocols::scoring::methods
• SpecialRotamerRSOCOP : protocols::toolbox::rotamer_set_operations
• SpecialRotamerRSOOP : protocols::toolbox::rotamer_set_operations
• SpecificResiduesNearInterfaceFilterCOP : protocols::protein_interface_design::filters
• SpecificResiduesNearInterfaceFilterOP : protocols::protein_interface_design::filters
• spherical() : protocols::fldsgn::potentials::sspot
• spin_down : protocols::pack_daemon
• split() : protocols::sparta
• split_by_ca_ca_dist() : protocols::loops
• split_by_resSeq() : protocols::loops
• split_pose() : protocols::stepwise::modeler
• split_topology_by_jump() : protocols::membrane::geometry
• split_up_remark_line() : protocols::toolbox::match_enzdes_util
• split_WhiteSpace() : protocols::sparta
• sqr() : protocols::cartesian , protocols::kinmatch , protocols::loophash , protocols::sic_dock
• square() : protocols::rbsegment_relax
• SS_BaseCOP : protocols::fldsgn::topology
• SS_BaseOP : protocols::fldsgn::topology
• ss_index() : protocols::frag_picker::quota
• SS_Info2_COP : protocols::fldsgn::topology
• SS_Info2_OP : protocols::fldsgn::topology
• ss_length_check() : protocols::frags
• SS_predictorAP : protocols::ss_prediction
• SS_predictorCAP : protocols::ss_prediction
• SS_predictorCOP : protocols::ss_prediction
• SS_predictorOP : protocols::ss_prediction
• SSFeatureCOP : protocols::comparative_modeling::features
• SSFeatureOP : protocols::comparative_modeling::features
• SSMotifFinderCOP : protocols::simple_filters
• SSMotifFinderOP : protocols::simple_filters
• SSPairPotentialOP : protocols::fldsgn::potentials::sspot
• SSType : protocols::comparative_modeling::features
• STAGE_1 : protocols::abinitio
• STAGE_2 : protocols::abinitio
• STAGE_3 : protocols::abinitio
• STAGE_3a : protocols::abinitio
• STAGE_3b : protocols::abinitio
• STAGE_4 : protocols::abinitio
• StageID : protocols::abinitio::abscript , protocols::abinitio
• StageIDs : protocols::abinitio::abscript
• StagePreparerCOP : protocols::abinitio::abscript
• StagePreparerOP : protocols::abinitio::abscript
• StandardPairingLibraryCOP : protocols::jumping
• StandardPairingLibraryOP : protocols::jumping
• StandardPivotsCOP : protocols::kinematic_closure::pivot_pickers
• StandardPivotsOP : protocols::kinematic_closure::pivot_pickers
• star_fold_tree() : protocols::protein_interface_design
• StarAbinitio_main() : protocols::star
• StarAbinitioCOP : protocols::star
• StarAbinitioOP : protocols::star
• start : protocols::loops
• START_BLOCK() : protocols::jd2
• start_cdr_loop : protocols::antibody
• start_from_tracer() : protocols::ligand_docking
• StartFromOP : protocols::ligand_docking
• StarTreeBuilderCOP : protocols::nonlocal
• StarTreeBuilderOP : protocols::nonlocal
• StartStructClaimerAP : protocols::topology_broker
• StartStructClaimerCAP : protocols::topology_broker
• StartStructClaimerCOP : protocols::topology_broker
• StartStructClaimerOP : protocols::topology_broker
• StateAccumulatingMatchFilterCOP : protocols::match::output
• StateAccumulatingMatchFilterOP : protocols::match::output
• StatEntries : protocols::abinitio
• StatEntryList : protocols::abinitio
• static_batch_id_map_ : protocols::features
• static_protocol_id_ : protocols::features
• StatsType : protocols::moves
• steal_ligands() : protocols::comparative_modeling
• StealLigandMoverCOP : protocols::comparative_modeling
• StealLigandMoverOP : protocols::comparative_modeling
• StealSideChainsMoverCOP : protocols::comparative_modeling
• StealSideChainsMoverOP : protocols::comparative_modeling
• StemFinderCOP : protocols::simple_filters
• StemFinderOP : protocols::simple_filters
• StepWiseBasicModelerOptionsCOP : protocols::stepwise::modeler::options
• StepWiseBasicModelerOptionsOP : protocols::stepwise::modeler::options
• StepWiseBasicOptionsCOP : protocols::stepwise::options
• StepWiseBasicOptionsOP : protocols::stepwise::options
• StepWiseBasicWorkingParametersCOP : protocols::stepwise::modeler::working_parameters
• StepWiseBasicWorkingParametersOP : protocols::stepwise::modeler::working_parameters
• StepWiseClustererCOP : protocols::stepwise::modeler::align
• StepWiseClustererOP : protocols::stepwise::modeler::align
• StepWiseConnectionSamplerCOP : protocols::stepwise::modeler
• StepWiseConnectionSamplerOP : protocols::stepwise::modeler
• StepWiseCSA_JobDistributorCOP : protocols::stepwise::setup
• StepWiseCSA_JobDistributorOP : protocols::stepwise::setup
• StepWiseJobDistributorCOP : protocols::stepwise::setup
• StepWiseJobDistributorOP : protocols::stepwise::setup
• StepWiseLegacyClustererCOP : protocols::stepwise::modeler::align
• StepWiseLegacyClustererOP : protocols::stepwise::modeler::align
• StepWiseLegacyClustererSilentBasedCOP : protocols::stepwise::modeler::align
• StepWiseLegacyClustererSilentBasedOP : protocols::stepwise::modeler::align
• StepWiseMasterPackerCOP : protocols::stepwise::modeler::packer
• StepWiseMasterPackerOP : protocols::stepwise::modeler::packer
• StepWiseMinimizerCOP : protocols::stepwise::modeler
• StepWiseMinimizerOP : protocols::stepwise::modeler
• StepWiseModelerCOP : protocols::stepwise::modeler
• StepWiseModelerOP : protocols::stepwise::modeler
• StepWiseModelerOptionsCOP : protocols::stepwise::modeler::options
• StepWiseModelerOptionsOP : protocols::stepwise::modeler::options
• StepWiseMonteCarloCOP : protocols::stepwise::monte_carlo
• StepWiseMonteCarloJobDistributorCOP : protocols::stepwise::setup
• StepWiseMonteCarloJobDistributorOP : protocols::stepwise::setup
• StepWiseMonteCarloOP : protocols::stepwise::monte_carlo
• StepWiseMonteCarloOptionsCOP : protocols::stepwise::monte_carlo::options
• StepWiseMonteCarloOptionsOP : protocols::stepwise::monte_carlo::options
• StepWisePackerCOP : protocols::stepwise::modeler::packer
• StepWisePackerOP : protocols::stepwise::modeler::packer
• StepWisePoseAlignerCOP : protocols::stepwise::modeler::align
• StepWisePoseAlignerOP : protocols::stepwise::modeler::align
• StepWiseProteinCCD_CloserCOP : protocols::stepwise::modeler::protein::loop_close
• StepWiseProteinCCD_CloserOP : protocols::stepwise::modeler::protein::loop_close
• StepWiseProteinCCD_MultiPoseCloserCOP : protocols::stepwise::modeler::protein::loop_close
• StepWiseProteinCCD_MultiPoseCloserOP : protocols::stepwise::modeler::protein::loop_close
• StepWiseProteinMinimizerCOP : protocols::stepwise::legacy::modeler::protein
• StepWiseProteinMinimizerOP : protocols::stepwise::legacy::modeler::protein
• StepWiseProteinModelerOptionsCOP : protocols::stepwise::modeler::options
• StepWiseProteinModelerOptionsOP : protocols::stepwise::modeler::options
• StepWiseProteinPoseSetupCOP : protocols::stepwise::legacy::modeler::protein
• StepWiseProteinPoseSetupOP : protocols::stepwise::legacy::modeler::protein
• StepWiseResiduePairScreenerCOP : protocols::stepwise::screener
• StepWiseResiduePairScreenerOP : protocols::stepwise::screener
• StepWiseRNA_CombineLongLoopFiltererOP : protocols::stepwise::modeler::rna
• StepWiseRNA_CombineLongLoopFiltererpCOP : protocols::stepwise::modeler::rna
• StepWiseRNA_MinimizerCOP : protocols::stepwise::legacy::modeler::rna
• StepWiseRNA_MinimizerOP : protocols::stepwise::legacy::modeler::rna
• StepWiseRNA_ModelerOptionsCOP : protocols::stepwise::modeler::options
• StepWiseRNA_ModelerOptionsOP : protocols::stepwise::modeler::options
• StepWiseRNA_PoseSelectionCOP : protocols::stepwise::legacy::modeler::rna
• StepWiseRNA_PoseSelectionOP : protocols::stepwise::legacy::modeler::rna
• StepWiseRNA_PoseSetupCOP : protocols::stepwise::legacy::modeler::rna
• StepWiseRNA_PoseSetupOP : protocols::stepwise::legacy::modeler::rna
• StepWiseRNA_VirtualSugarJustInTimeInstantiatorCOP : protocols::stepwise::modeler::rna::sugar
• StepWiseRNA_VirtualSugarJustInTimeInstantiatorOP : protocols::stepwise::modeler::rna::sugar
• StepWiseRNA_VirtualSugarSamplerFromStringListCOP : protocols::stepwise::modeler::rna::sugar
• StepWiseRNA_VirtualSugarSamplerFromStringListOP : protocols::stepwise::modeler::rna::sugar
• StepWiseSampleAndScreenCOP : protocols::stepwise
• StepWiseSampleAndScreenOP : protocols::stepwise
• StepWiseSamplerAnyOP : protocols::stepwise::sampler
• StepWiseSamplerBaseOP : protocols::stepwise::sampler
• StepWiseSamplerCombOP : protocols::stepwise::sampler
• StepWiseSamplerOneTorsionOP : protocols::stepwise::sampler
• StepWiseSamplerOneValueCombOP : protocols::stepwise::sampler
• StepWiseSamplerOneValueOP : protocols::stepwise::sampler
• StepWiseSamplerSizedAnyOP : protocols::stepwise::sampler
• StepWiseSamplerSizedCombOP : protocols::stepwise::sampler
• StepWiseSamplerSizedOP : protocols::stepwise::sampler
• StepWiseSamplerType : protocols::stepwise::sampler
• StepWiseScreenerCOP : protocols::stepwise::screener
• StepWiseScreenerOP : protocols::stepwise::screener
• StepWiseScreenerType : protocols::stepwise::screener
• StepWiseWorkingParametersCOP : protocols::stepwise::modeler::working_parameters
• StepWiseWorkingParametersOP : protocols::stepwise::modeler::working_parameters
• STMStoredTaskCOP : protocols::toolbox::task_operations
• STMStoredTaskOP : protocols::toolbox::task_operations
• stop : protocols::loops
• store_distance_snapshot() : protocols::noesy_assign
• store_distmap_with_namedatoms() : protocols::noesy_assign
• store_RDC_segments_in_pose() : protocols::scoring
• StoreCombinedStoredTasksMoverCOP : protocols::toolbox::task_operations
• StoreCombinedStoredTasksMoverOP : protocols::toolbox::task_operations
• StoreCompoundTaskMoverCOP : protocols::toolbox::task_operations
• StoreCompoundTaskMoverOP : protocols::toolbox::task_operations
• StoreTaskMoverCOP : protocols::toolbox::task_operations
• StoreTaskMoverOP : protocols::toolbox::task_operations
• str() : protocols::kinmatch
• strand : protocols::loops::loop_closure::ccd
• StrandBundleFeaturesCOP : protocols::features::strand_assembly
• StrandBundleFeaturesOP : protocols::features::strand_assembly
• StrandCOP : protocols::fldsgn::topology
• StrandOP : protocols::fldsgn::topology
• StrandPairingCOP : protocols::fldsgn::topology
• StrandPairingOP : protocols::fldsgn::topology
• StrandPairings : protocols::fldsgn::topology
• StrandPairingSetCOP : protocols::fldsgn::topology
• StrandPairingSetOP : protocols::fldsgn::topology
• Strands : protocols::fldsgn::topology
• String : protocols::flxbb
• string_join() : protocols::dna
• string_to_int() : protocols::stepwise::modeler::rna
• string_to_real() : protocols::stepwise::modeler::rna
• StringFilter_pair : protocols::filters
• StringList : protocols::sparta
• Strings : protocols::dna , protocols::optimize_weights
• struct_ids_from_tag() : protocols::features
• StructPerturberCMCOP : protocols::abinitio::abscript
• StructPerturberCMOP : protocols::abinitio::abscript
• StructuralSimilarityEvaluatorCOP : protocols::simple_filters
• StructuralSimilarityEvaluatorOP : protocols::simple_filters
• StructureFeaturesCOP : protocols::features
• StructureFeaturesOP : protocols::features
• StructureID : protocols::features
• StructureRestrictorCOP : protocols::moves
• StructureRestrictorOP : protocols::moves
• StructureScoresFeaturesCOP : protocols::features
• StructureScoresFeaturesOP : protocols::features
• STUB_APPLIER : protocols::stepwise::screener
• STUB_DISTANCE : protocols::stepwise::screener
• stub_from_points() : protocols::hotspot_hashing
• stub_tgt_angle() : protocols::hotspot_hashing
• stub_to_points() : protocols::hotspot_hashing
• StubApplierCOP : protocols::stepwise::screener
• StubApplierOP : protocols::stepwise::screener
• StubDistanceScreenerCOP : protocols::stepwise::screener
• StubDistanceScreenerOP : protocols::stepwise::screener
• StubMode : protocols::cyclic_peptide
• StubScoreFilterCOP : protocols::protein_interface_design::filters
• StubScoreFilterOP : protocols::protein_interface_design::filters
• StubScoreLoopsFilterCOP : protocols::protein_interface_design::filters
• StubScoreLoopsFilterOP : protocols::protein_interface_design::filters
• StubStatus : protocols::hotspot_hashing
• SubroutineMoverCOP : protocols::protein_interface_design::movers
• SubroutineMoverOP : protocols::protein_interface_design::movers
• substitute_residue() : protocols::dna
• SUBTRACT : protocols::simple_filters
• Success : protocols::loops::loop_mover
• success_message : protocols::pack_daemon
• SUGAR_INSTANTIATOR : protocols::stepwise::screener
• SugarInstantiateMoverCOP : protocols::stepwise::modeler::rna::sugar
• SugarInstantiateMoverOP : protocols::stepwise::modeler::rna::sugar
• SugarInstantiatorCOP : protocols::stepwise::screener
• SugarInstantiatorOP : protocols::stepwise::screener
• SugarModelingCOP : protocols::stepwise::modeler::rna::sugar
• SugarModelingOP : protocols::stepwise::modeler::rna::sugar
• SugarVirtualizeMoverCOP : protocols::stepwise::modeler::rna::sugar
• SugarVirtualizeMoverOP : protocols::stepwise::modeler::rna::sugar
• suite_rmsd() : protocols::stepwise::modeler::rna
• suite_square_deviation() : protocols::stepwise::modeler::rna
• SULPH : protocols::match
• SUM : protocols::simple_filters
• sum_constraint_scoreterms() : protocols::enzdes::enzutil
• sum_IntraNOE() : protocols::noesy_assign
• sum_peak_volumes() : protocols::noesy_assign
• sum_total_residue_energy() : protocols::protein_interface_design
• superimpose() : protocols::toolbox
• superimpose_overhangs_heavy() : protocols::grafting
• superimpose_pose_legacy() : protocols::stepwise::modeler::align
• superimpose_pose_on_subset_bb() : protocols::fibril
• superimpose_pose_on_subset_CA() : protocols::toolbox::pose_manipulation
• superimpose_with_stepwise_aligner() : protocols::stepwise::modeler::align
• SuperimposeMoverCOP : protocols::simple_moves
• SuperimposeMoverOP : protocols::simple_moves
• superposition_transform() : protocols::seeded_abinitio , protocols::toolbox
• SurfaceDockingProtocolOP : protocols::surface_docking
• SurfaceOrientMoverOP : protocols::surface_docking
• SurfaceParametersOP : protocols::surface_docking
• SurfaceVectorFallbackConfigurationCOP : protocols::surface_docking
• SurfaceVectorFallbackConfigurationOP : protocols::surface_docking
• SurfaceVectorLoaderCOP : protocols::surface_docking
• SurfaceVectorLoaderOP : protocols::surface_docking
• SurfaceVectorOptionsCOP : protocols::surface_docking
• SurfaceVectorOptionsOP : protocols::surface_docking
• SurrogateVariableExpressionCOP : protocols::pack_daemon
• SurrogateVariableExpressionOP : protocols::pack_daemon
• SWA_MoveCOP : protocols::stepwise::monte_carlo
• SWA_MoveOP : protocols::stepwise::monte_carlo
• SWA_MoveSelectorCOP : protocols::stepwise::monte_carlo
• SWA_MoveSelectorOP : protocols::stepwise::monte_carlo
• switch_focus_among_poses_randomly() : protocols::stepwise::modeler
• switch_focus_to_other_pose() : protocols::stepwise::modeler
• SWITCH_TO_FULLATOM : protocols::abinitio
• SwitchChainOrderMoverCOP : protocols::simple_moves
• SwitchChainOrderMoverOP : protocols::simple_moves
• SwitchResidueTypeSetMoverCOP : protocols::simple_moves
• SwitchResidueTypeSetMoverOP : protocols::simple_moves
• SymDock_main() : protocols::symmetric_docking
• SymDockingHiResCOP : protocols::symmetric_docking
• SymDockingHiResOP : protocols::symmetric_docking
• SymDockingInitialPerturbationCOP : protocols::simple_moves::symmetry
• SymDockingInitialPerturbationOP : protocols::simple_moves::symmetry
• SymDockingLowResCOP : protocols::symmetric_docking
• SymDockingLowResOP : protocols::symmetric_docking
• SymDockProtocolCOP : protocols::symmetric_docking
• SymDockProtocolOP : protocols::symmetric_docking
• SymDofMoverCOP : protocols::matdes
• SymDofMoverOP : protocols::matdes
• SymEnergyCutRotamerTrialsMoverCOP : protocols::simple_moves::symmetry
• SymEnergyCutRotamerTrialsMoverOP : protocols::simple_moves::symmetry
• SymFoldandDockMoveRbJumpMoverCOP : protocols::symmetric_docking
• SymFoldandDockMoveRbJumpMoverOP : protocols::symmetric_docking
• SymFoldandDockRbTrialMoverCOP : protocols::simple_moves::symmetry , protocols::symmetric_docking
• SymFoldandDockRbTrialMoverOP : protocols::simple_moves::symmetry , protocols::symmetric_docking
• SymFoldandDockSlideTrialMoverCOP : protocols::symmetric_docking
• SymFoldandDockSlideTrialMoverOP : protocols::symmetric_docking
• SymInterfaceSidechainMinMoverCOP : protocols::symmetric_docking
• SymInterfaceSidechainMinMoverOP : protocols::symmetric_docking
• SymmetricAddMembraneMoverCOP : protocols::membrane::symmetry
• SymmetricAddMembraneMoverOP : protocols::membrane::symmetry
• SymmetricFragmentMoverCOP : protocols::simple_moves
• SymmetricFragmentMoverOP : protocols::simple_moves
• SymmetricRMSMoverCOP : protocols::simple_moves::symmetry
• SymmetricRMSMoverOP : protocols::simple_moves::symmetry
• symmetrize_spans() : protocols::membrane::symmetry
• symmetrizeBfactors() : protocols::electron_density
• SymmetryClaimAP : protocols::topology_broker::claims
• SymmetryClaimCAP : protocols::topology_broker::claims
• SymmetryClaimCOP : protocols::topology_broker::claims
• SymmetryClaimerAP : protocols::topology_broker
• SymmetryClaimerCAP : protocols::topology_broker
• SymmetryClaimerCOP : protocols::topology_broker
• SymmetryClaimerOP : protocols::topology_broker
• SymmetryClaimOP : protocols::topology_broker::claims
• SymmetryClaims : protocols::topology_broker::claims
• SymmetrySliderCOP : protocols::simple_moves::symmetry
• SymmetrySliderOP : protocols::simple_moves::symmetry
• SymMinMoverCOP : protocols::simple_moves::symmetry
• SymMinMoverOP : protocols::simple_moves::symmetry
• SymPackRotamersMoverCOP : protocols::simple_moves::symmetry
• SymPackRotamersMoverOP : protocols::simple_moves::symmetry
• SymRestrictTaskForDockingOP : protocols::symmetric_docking
• SymRotamerTrialsMoverCOP : protocols::simple_moves::symmetry
• SymRotamerTrialsMoverOP : protocols::simple_moves::symmetry
• SymShakeStructureMoverCOP : protocols::simple_moves::symmetry
• SymShakeStructureMoverOP : protocols::simple_moves::symmetry
• SymSidechainMinMoverCOP : protocols::symmetric_docking
• SymSidechainMinMoverOP : protocols::symmetric_docking
• SymUnsatHbondFilterCOP : protocols::matdes
• SymUnsatHbondFilterOP : protocols::matdes