Here is a list of all namespace members with links to the namespace documentation for each member:

- o -

• O : protocols::comparative_modeling::features , protocols::sic_dock::scores
• O2M_MutateMoverSP : protocols::simple_moves
• O2PRIME_PACK : protocols::stepwise::screener
• o2prime_trials() : protocols::stepwise::modeler::rna
• O2PrimePackerCOP : protocols::stepwise::modeler::rna::o2prime
• O2PrimePackerOP : protocols::stepwise::modeler::rna::o2prime
• O2PrimeScreenerCOP : protocols::stepwise::screener
• O2PrimeScreenerOP : protocols::stepwise::screener
• OccupiedSpaceHashCOP : protocols::match
• OccupiedSpaceHashOP : protocols::match
• OL_features : protocols::rotamer_recovery
• OL_full : protocols::rotamer_recovery
• OL_none : protocols::rotamer_recovery
• OligomericAverageDegreeFilterCOP : protocols::matdes
• OligomericAverageDegreeFilterOP : protocols::matdes
• OmegaPerturberCOP : protocols::kinematic_closure::perturbers
• OmegaPerturberOP : protocols::kinematic_closure::perturbers
• on_pose_accept() : protocols::medal
• ONE_TORSION : protocols::stepwise::sampler
• ONE_VALUE : protocols::stepwise::sampler
• ONE_VALUE_COMB : protocols::stepwise::sampler
• OopCreatorMoverCOP : protocols::ncbb::oop
• OopCreatorMoverCreatorCOP : protocols::ncbb::oop
• OopCreatorMoverCreatorOP : protocols::ncbb::oop
• OopCreatorMoverOP : protocols::ncbb::oop
• OopDockDesignProtocolCOP : protocols::ncbb::oop
• OopDockDesignProtocolCreatorCOP : protocols::ncbb::oop
• OopDockDesignProtocolCreatorOP : protocols::ncbb::oop
• OopDockDesignProtocolOP : protocols::ncbb::oop
• OopDPuckMinusMoverCOP : protocols::simple_moves::oop
• OopDPuckMinusMoverOP : protocols::simple_moves::oop
• OopDPuckPlusMoverCOP : protocols::simple_moves::oop
• OopDPuckPlusMoverOP : protocols::simple_moves::oop
• OopMoverCOP : protocols::simple_moves::oop
• OopMoverOP : protocols::simple_moves::oop
• OopPatcherCOP : protocols::simple_moves::oop
• OopPatcherOP : protocols::simple_moves::oop
• OopPuckMinusMoverCOP : protocols::simple_moves::oop
• OopPuckMinusMoverOP : protocols::simple_moves::oop
• OopPuckPlusMoverCOP : protocols::simple_moves::oop
• OopPuckPlusMoverOP : protocols::simple_moves::oop
• OopRandomPuckMoverCOP : protocols::simple_moves::oop
• OopRandomPuckMoverOP : protocols::simple_moves::oop
• OopRandomSmallMoverCOP : protocols::simple_moves::oop
• OopRandomSmallMoverOP : protocols::simple_moves::oop
• open_stream() : protocols::noesy_assign
• Operation : protocols::simple_filters
• operator!=() : protocols::jd2
• operator&() : protocols::loop_modeling
• operator<<() : protocols::abinitio , protocols::antibody , protocols::canonical_sampling , protocols::dna , protocols::docking , protocols::environment::claims , protocols::farna , protocols::features::helixAssembly , protocols::fldsgn::topology , protocols::frag_picker , protocols::frags , protocols::genetic_algorithm , protocols::hotspot_hashing , protocols::jd2::archive , protocols::jd2 , protocols::jumping , protocols::ligand_docking::ligand_options , protocols::loops::loop_closure::ccd , protocols::loops::loop_mover::perturb , protocols::loops::loop_mover::refine , protocols::loops , protocols::match::output , protocols::motifs , protocols::moves , protocols::noesy_assign , protocols::optimize_weights , protocols::pmut_scan , protocols::rigid , protocols::scoring::methods::pcs2 , protocols::scoring::methods::pcs , protocols::scoring::methods::pcsTs1 , protocols::scoring::methods::pcsTs2 , protocols::scoring::methods::pcsTs3 , protocols::scoring::methods::pcsTs4 , protocols::scoring , protocols::sic_dock , protocols::simple_moves , protocols::sparta , protocols::stepwise::modeler::rna::phosphate , protocols::stepwise::monte_carlo , protocols::toolbox , protocols::topology_broker::claims , protocols::topology_broker
• operator==() : protocols::jd2
• operator>>() : protocols::abinitio , protocols::frags , protocols::hotspot_hashing , protocols::jd2::archive , protocols::noesy_assign , protocols::sasa_scores , protocols::toolbox , protocols::topology_broker
• OperatorCOP : protocols::simple_filters
• OperatorOP : protocols::simple_filters
• operator|() : protocols::loop_modeling
• oprod() : protocols::toolbox
• OptEDataOP : protocols::optimize_weights
• OptEMultifuncAP : protocols::optimize_weights
• OptEMultifuncCAP : protocols::optimize_weights
• OptEMultifuncCOP : protocols::optimize_weights
• OptEMultifuncMPIMessages : protocols::optimize_weights
• OptEMultifuncOP : protocols::optimize_weights
• OptEPositionDataOP : protocols::optimize_weights
• OptEPositionDataOPs : protocols::optimize_weights
• OptEPositionDataType : protocols::optimize_weights
• OptEVariableExpressionCOP : protocols::optimize_weights
• OptEVariableExpressionOP : protocols::optimize_weights
• optimal_connection_point() : protocols::protein_interface_design
• optimize() : protocols::hybridization
• options_registered_ : protocols::evaluation
• OR : protocols::filters , protocols::toolbox::task_operations
• OrbitalsFeaturesCOP : protocols::features
• OrbitalsFeaturesOP : protocols::features
• order() : protocols::forge::methods
• OrderedSequentialSymmetrySliderCOP : protocols::simple_moves::symmetry
• OrderedSequentialSymmetrySliderOP : protocols::simple_moves::symmetry
• original_pose_residue_is_in_residue_map() : protocols::generalized_kinematic_closure
• OriginalBackboneBuildPointCOP : protocols::match::upstream
• OriginalBackboneBuildPointOP : protocols::match::upstream
• ORNOT : protocols::filters , protocols::toolbox::task_operations
• OTFFlexbbInteractionGraphCOP : protocols::flexpack::interaction_graph
• OTFFlexbbInteractionGraphOP : protocols::flexpack::interaction_graph
• OtherContextScoreFunctionCOP : protocols::flexpack
• OtherContextScoreFunctionOP : protocols::flexpack
• output_bool_list() : protocols::stepwise::legacy::modeler::rna
• output_boolean() : protocols::stepwise::modeler
• output_copy_dofs() : protocols::stepwise::modeler::rna
• output_data() : protocols::stepwise::modeler::rna
• output_error_message() : protocols::scoring::methods::pcs2
• output_fold_tree_info() : protocols::stepwise::legacy::modeler::rna
• output_intermediate_pose() : protocols::jd2
• output_is_prepend_map() : protocols::stepwise::legacy::modeler::rna
• output_movemap() : protocols::stepwise::modeler
• output_packstat() : protocols::vip
• output_pair_size() : protocols::stepwise::legacy::modeler::rna
• output_pose_list() : protocols::stepwise::legacy::modeler::protein
• output_protein_movemap_header() : protocols::stepwise::modeler
• output_res_map() : protocols::stepwise::modeler::rna
• output_residue_struct() : protocols::stepwise::modeler::rna
• output_rna_movemap_header() : protocols::stepwise::modeler
• output_rotamer() : protocols::stepwise::modeler::rna
• output_seq_num_list() : protocols::stepwise::modeler::rna
• output_silent_struct() : protocols::stepwise::legacy::modeler::protein
• output_size_list() : protocols::stepwise::legacy::modeler::rna
• output_title_text() : protocols::stepwise::modeler::rna
• output_to_silent_file() : protocols::stepwise::monte_carlo
• OutputLevel : protocols::rotamer_recovery
• OutputterSP : protocols::outputter
• OutputWriterCOP : protocols::match::output
• OutputWriterOP : protocols::match::output
• overlap_chainbreak() : protocols::forge::methods
• OXY : protocols::match