Here is a list of all namespace members with links to the namespace documentation for each member:

- i -

• I : protocols::abinitio::abscript
• IC_RefineCCDStandard : protocols::loops::loop_mover::refine
• IC_RepackTrial : protocols::loops::loop_mover::refine
• IC_ShearMinCCDTrial : protocols::loops::loop_mover::refine
• IC_SmallMinCCDTrial : protocols::loops::loop_mover::refine
• iCode : protocols::loops
• ideal_COMs() : protocols::forge::remodel
• idealize_combined_pose() : protocols::grafting
• idealize_loop() : protocols::loops
• IdealizeMoverCOP : protocols::idealize
• IdealizeMoverOP : protocols::idealize
• IdealizeNonPhiPsiCOP : protocols::kinematic_closure::perturbers
• IdealizeNonPhiPsiOP : protocols::kinematic_closure::perturbers
• identify_sheet_id_by_residue_end() : protocols::features::strand_assembly
• IfThenFilterCOP : protocols::filters
• IfThenFilterOP : protocols::filters
• IgnoreSubsetConstraintSetCOP : protocols::comparative_modeling
• IgnoreSubsetConstraintSetOP : protocols::comparative_modeling
• II : protocols::abinitio::abscript
• IIIa : protocols::abinitio::abscript
• IIIb : protocols::abinitio::abscript
• IMGT_Scheme : protocols::antibody
• ImplicitFastClashCheckAP : protocols::scoring
• ImplicitFastClashCheckCAP : protocols::scoring
• ImplicitFastClashCheckCOP : protocols::scoring
• ImplicitFastClashCheckOP : protocols::scoring
• import_pose_from_silent_file() : protocols::stepwise::legacy::modeler::rna
• ImportUnboundRotamersOperationCOP : protocols::toolbox::task_operations
• ImportUnboundRotamersOperationOP : protocols::toolbox::task_operations
• in_archive_rank_ : protocols::jd2::archive
• in_file_buf_rank_ : protocols::jd2::archive
• in_list() : protocols::farna
• in_master_rank_ : protocols::jd2::archive
• in_min_client_rank_ : protocols::jd2::archive
• in_ngbat_sphere() : protocols::neighbor
• in_nrg_graph() : protocols::neighbor
• Inclusive : protocols::features::RelevantResiduesMode
• increment_stageid() : protocols::abinitio::abscript
• IndependentLoopMoverCOP : protocols::loops::loop_mover
• IndependentLoopMoverOP : protocols::loops::loop_mover
• IndexList : protocols::loop_modeling
• inherit_cuts() : protocols::environment
• init() : protocols::init
• init_backrub_mover_with_options() : protocols::backrub
• init_rotamers_centroids() : protocols::make_rot_lib
• init_str_selector() : protocols::environment
• initialize_atomtype_2_probe_radius_map() : protocols::match
• initialize_attachment_type_name() : protocols::stepwise::monte_carlo
• initialize_ga_randomizer_from_entity_task() : protocols::pack_daemon
• initialize_group_list() : protocols::noesy_assign
• initialize_input_streams() : protocols::stepwise::modeler::protein
• initialize_input_streams_with_residue_info() : protocols::stepwise::modeler::protein
• initialize_move_type_name() : protocols::stepwise::monte_carlo
• initialize_native_and_align_pose() : protocols::stepwise::setup
• initialize_o2prime_pack_scorefxn() : protocols::stepwise::modeler
• initialize_pack_scorefxn() : protocols::stepwise::modeler
• initialize_pose_and_other_poses_from_command_line() : protocols::stepwise::setup
• initialize_sample_scorefxn() : protocols::stepwise::modeler
• initialize_ss() : protocols::comparative_modeling
• initialize_stub() : protocols::toolbox::rigid_body
• initialize_task_from_entity_resfile_and_secondary_resfile() : protocols::pack_daemon
• initialize_xyz_parameters() : protocols::stepwise::modeler::rna::rigid_body
• InitializeByBinsCOP : protocols::simple_moves::bin_transitions
• InitializeByBinsCOPs : protocols::simple_moves::bin_transitions
• InitializeByBinsOP : protocols::simple_moves::bin_transitions
• InitializeByBinsOPs : protocols::simple_moves::bin_transitions
• InnerJobCOP : protocols::jd2
• InnerJobOP : protocols::jd2
• InnerMap : protocols::noesy_assign
• InnerMultiThreadingJobCOP : protocols::jd2
• InnerMultiThreadingJobOP : protocols::jd2
• INPUT_STREAM : protocols::stepwise::sampler
• InputStreamStepWiseSamplerCOP : protocols::stepwise::sampler::input_streams
• InputStreamStepWiseSamplerOP : protocols::stepwise::sampler::input_streams
• InputStreamWithResidueInfoCOP : protocols::stepwise::modeler::protein
• InputStreamWithResidueInfoOP : protocols::stepwise::modeler::protein
• InputterSP : protocols::inputter
• InputterStreamSP : protocols::inputter
• insert : protocols::cyclic_peptide
• insert_cdr_into_antibody() : protocols::antibody::design
• insert_closed_range() : protocols::forge::methods
• insert_fragment() : protocols::frags
• insert_half_open_range() : protocols::forge::methods
• insert_point_mut_filter_vals() : protocols::design_opt , protocols::matdes
• insert_pose_into_pose() : protocols::grafting
• insert_random_fragments_in_flexible_protein_regions() : protocols::frags
• InsertPoseIntoPoseMoverCOP : protocols::grafting
• InsertPoseIntoPoseMoverOP : protocols::grafting
• InSetExpressionCOP : protocols::pack_daemon
• InSetExpressionOP : protocols::pack_daemon
• instantiate_any_virtual_sugars() : protocols::stepwise::modeler::rna::sugar
• INTEGRATION_TEST : protocols::stepwise::screener
• IntegrationTestBreakerCOP : protocols::stepwise::screener
• IntegrationTestBreakerOP : protocols::stepwise::screener
• InteractingRotamerOperationCOP : protocols::toolbox::task_operations
• InteractingRotamerOperationOP : protocols::toolbox::task_operations
• InterbondAngleScoreCOP : protocols::frag_picker::scores
• InterbondAngleScoreOP : protocols::frag_picker::scores
• interface_builder_tracer() : protocols::ligand_docking
• INTERFACE_CALC() : protocols::anchored_design
• interface_distance_tracer() : protocols::ligand_docking::ligand_options
• InterfaceAnalyzerMoverCOP : protocols::analysis
• InterfaceAnalyzerMoverOP : protocols::analysis
• InterfaceBindingEnergyDensityFilterCOP : protocols::simple_filters
• InterfaceBindingEnergyDensityFilterOP : protocols::simple_filters
• InterfaceBuilderCOP : protocols::ligand_docking
• InterfaceBuilderCOPs : protocols::ligand_docking
• InterfaceBuilderOP : protocols::ligand_docking
• InterfaceBuilderOPs : protocols::ligand_docking
• InterfaceCOP : protocols::scoring
• InterfaceFeaturesCOP : protocols::features
• InterfaceFeaturesOP : protocols::features
• InterfaceInfoCOP : protocols::scoring
• InterfaceInfoOP : protocols::scoring
• InterfaceOP : protocols::scoring
• InterfacePackingFilterCOP : protocols::matdes
• InterfacePackingFilterOP : protocols::matdes
• InterfaceRegion : protocols::analysis
• InterfaceSasaFilterCOP : protocols::simple_filters
• InterfaceSasaFilterOP : protocols::simple_filters
• InterfaceScoreCalculator_tracer() : protocols::ligand_docking
• InterfaceScoreCalculatorCOP : protocols::ligand_docking
• InterfaceScoreCalculatorCOPs : protocols::ligand_docking
• InterfaceScoreCalculatorOP : protocols::ligand_docking
• InterfaceScoreCalculatorOPs : protocols::ligand_docking
• InterfaceSidechainMinMoverCOP : protocols::docking
• InterfaceSidechainMinMoverOP : protocols::docking
• InterfaceTaskOperationCOP : protocols::toolbox::task_operations
• InterfaceTaskOperationOP : protocols::toolbox::task_operations
• InterGroupNeighborsCalculatorCOP : protocols::toolbox::pose_metric_calculators
• InterGroupNeighborsCalculatorOP : protocols::toolbox::pose_metric_calculators
• InterlockAromaOP : protocols::flxbb
• InterlockingAromaFilterCOP : protocols::fldsgn::filters
• InterlockingAromaFilterOP : protocols::fldsgn::filters
• interpolation_type_enum_to_string() : protocols::canonical_sampling
• interpolation_type_string_to_enum() : protocols::canonical_sampling
• InterpolationType : protocols::canonical_sampling
• InterRepeatContactFilterCOP : protocols::simple_filters
• InterRepeatContactFilterOP : protocols::simple_filters
• interval_to_loop() : protocols::forge::methods
• intervals_to_confirmation_loops() : protocols::forge::methods
• intervals_to_loops() : protocols::forge::methods
• IntraRepeatContactFilterCOP : protocols::simple_filters
• IntraRepeatContactFilterOP : protocols::simple_filters
• introduce_datamap_cuts() : protocols::environment
• INVALID : protocols::comparative_modeling::features
• INVALID_SS : protocols::comparative_modeling::features
• invalidate_residues_spanning_cuts() : protocols::medal
• InverseRotamersRCGCAP : protocols::forge::constraints
• InverseRotamersRCGOP : protocols::forge::constraints
• invert_include_residues() : protocols::evaluation
• involved_in_phosphate_torsion() : protocols::farna
• InvrotCollectorCOP : protocols::toolbox::match_enzdes_util
• InvrotCollectorOP : protocols::toolbox::match_enzdes_util
• InvrotTargetCOP : protocols::toolbox::match_enzdes_util
• InvrotTargetOP : protocols::toolbox::match_enzdes_util
• InvrotTreeCOP : protocols::toolbox::match_enzdes_util
• InvrotTreeNodeBaseAP : protocols::toolbox::match_enzdes_util
• InvrotTreeNodeBaseCAP : protocols::toolbox::match_enzdes_util
• InvrotTreeNodeBaseCOP : protocols::toolbox::match_enzdes_util
• InvrotTreeNodeBaseOP : protocols::toolbox::match_enzdes_util
• InvrotTreeNodeCOP : protocols::toolbox::match_enzdes_util
• InvrotTreeNodeOP : protocols::toolbox::match_enzdes_util
• InvrotTreeOP : protocols::toolbox::match_enzdes_util
• InvrotTreeRCGCAP : protocols::forge::constraints
• InvrotTreeRCGOP : protocols::forge::constraints
• invstub() : protocols::sic_dock
• IRCollectionCOP : protocols::motifs
• IRCollectionOP : protocols::motifs
• IRCollectionOPs : protocols::motifs
• irt() : protocols::motifs
• is_blank_seq() : protocols::stepwise::modeler::rna::helix
• is_catalytic_seqpos() : protocols::enzdes::enzutil
• is_close_chain_break() : protocols::stepwise::legacy::modeler::protein
• is_cutpoint_closed() : protocols::stepwise::modeler
• is_d_chiral() : protocols::simple_moves::chiral
• is_digit() : protocols::enzdes::enzutil
• is_in_list() : protocols::generalized_kinematic_closure
• is_interface_vector() : protocols::ligand_docking::ligand_options
• is_l_chiral() : protocols::simple_moves::chiral
• is_lowercase_letter() : protocols::enzdes::enzutil
• is_nonempty_input_silent_file() : protocols::stepwise::legacy::modeler::rna
• is_not_neighbor_to_rigid() : protocols::topology_broker
• is_num_in_list() : protocols::farna
• is_part() : protocols::seeded_abinitio
• is_protein() : protocols::stepwise::modeler
• is_residues_in_contact() : protocols::stepwise::modeler::rna
• is_same_sugar_pucker() : protocols::stepwise::legacy::modeler::rna
• is_scofx_cstfied() : protocols::enzdes::enzutil
• is_sugar_virtual() : protocols::stepwise::modeler::rna::sugar
• is_this_strand_at_edge() : protocols::features::strand_assembly
• is_this_strand_at_edge_by_looking_db() : protocols::features::strand_assembly
• is_uppercase_letter() : protocols::enzdes::enzutil
• is_valid_backbone() : protocols::loophash
• is_virtual_base() : protocols::stepwise::modeler::rna
• isDigit() : protocols::sparta
• isDirExists() : protocols::sparta
• isSpace() : protocols::sparta
• IteratedConvergenceMoverCOP : protocols::moves
• IteratedConvergenceMoverOP : protocols::moves
• IterativeVectorExpressionCOP : protocols::pack_daemon
• IterativeVectorExpressionOP : protocols::pack_daemon
• itoa() : protocols::sparta
• IVa : protocols::abinitio::abscript
• IVb : protocols::abinitio::abscript