Here is a list of all namespace members with links to the namespace documentation for each member:

- l -

• L : protocols::features
• l1 : protocols::antibody
• L1_10_1 : protocols::antibody::clusters
• L1_10_2 : protocols::antibody::clusters
• L1_11_1 : protocols::antibody::clusters
• L1_11_2 : protocols::antibody::clusters
• L1_11_3 : protocols::antibody::clusters
• L1_12_1 : protocols::antibody::clusters
• L1_12_2 : protocols::antibody::clusters
• L1_12_3 : protocols::antibody::clusters
• L1_13_1 : protocols::antibody::clusters
• L1_13_2 : protocols::antibody::clusters
• L1_14_1 : protocols::antibody::clusters
• L1_14_2 : protocols::antibody::clusters
• L1_15_1 : protocols::antibody::clusters
• L1_15_2 : protocols::antibody::clusters
• L1_16_1 : protocols::antibody::clusters
• L1_17_1 : protocols::antibody::clusters
• l2 : protocols::antibody
• L2_12_1 : protocols::antibody::clusters
• L2_12_2 : protocols::antibody::clusters
• L2_8_1 : protocols::antibody::clusters
• L2_8_2 : protocols::antibody::clusters
• L2_8_3 : protocols::antibody::clusters
• L2_8_4 : protocols::antibody::clusters
• L2_8_5 : protocols::antibody::clusters
• L2DChiralData : protocols::simple_moves::chiral
• L2DChiralMap() : protocols::simple_moves::chiral
• l3 : protocols::antibody
• L3_10_1 : protocols::antibody::clusters
• L3_10_cis7_8_1 : protocols::antibody::clusters
• L3_10_cis8_1 : protocols::antibody::clusters
• L3_11_1 : protocols::antibody::clusters
• L3_11_cis7_1 : protocols::antibody::clusters
• L3_12_1 : protocols::antibody::clusters
• L3_13_1 : protocols::antibody::clusters
• L3_7_1 : protocols::antibody::clusters
• L3_8_1 : protocols::antibody::clusters
• L3_8_2 : protocols::antibody::clusters
• L3_8_cis6_1 : protocols::antibody::clusters
• L3_9_1 : protocols::antibody::clusters
• L3_9_2 : protocols::antibody::clusters
• L3_9_cis6_1 : protocols::antibody::clusters
• L3_9_cis7_1 : protocols::antibody::clusters
• L3_9_cis7_2 : protocols::antibody::clusters
• L3_9_cis7_3 : protocols::antibody::clusters
• L_chain_last_loop : protocols::antibody
• L_CHIRALITY : protocols::simple_moves::chiral
• L_SS : protocols::comparative_modeling::features
• label_atom_name() : protocols::noesy_assign
• LabelResonanceAP : protocols::noesy_assign
• LabelResonanceCAP : protocols::noesy_assign
• LabelResonanceCOP : protocols::noesy_assign
• LabelResonanceOP : protocols::noesy_assign
• lambda : protocols::antibody
• LargeFragWeightAP : protocols::topology_broker::weights
• LargeFragWeightCAP : protocols::topology_broker::weights
• LargeFragWeightCOP : protocols::topology_broker::weights
• LargeFragWeightOP : protocols::topology_broker::weights
• LAST_ADD_OR_DELETE_CHOICE : protocols::stepwise::monte_carlo
• LAST_ATTACHMENT_TYPE : protocols::stepwise::monte_carlo
• LAST_STAGE : protocols::abinitio
• LayerDesignOperationOP : protocols::flxbb
• LazySilentFileJobInputterOP : protocols::jd2
• LegacyKicSamplerCOP : protocols::loop_modeling::samplers
• LegacyKicSamplerOP : protocols::loop_modeling::samplers
• LegacyRootClaimAP : protocols::topology_broker::claims
• LegacyRootClaimCAP : protocols::topology_broker::claims
• LegacyRootClaimCOP : protocols::topology_broker::claims
• LegacyRootClaimOP : protocols::topology_broker::claims
• LegacyRootClaims : protocols::topology_broker::claims
• LENGTH_TLC : protocols::unfolded_state_energy_calculator
• let_rigid_body_jumps_move() : protocols::farna
• LHRepulsiveRampCOP : protocols::antibody
• LHRepulsiveRampLegacyCOP : protocols::antibody
• LHRepulsiveRampLegacyOP : protocols::antibody
• LHRepulsiveRampOP : protocols::antibody
• LHSnugFitLegacyCOP : protocols::antibody
• LHSnugFitLegacyOP : protocols::antibody
• lib_full_path() : protocols::canonical_sampling::mc_convergence_checks
• ligand_area_tracer() : protocols::ligand_docking
• ligand_design_tracer() : protocols::ligand_docking
• ligand_scores_tracer() : protocols::ligand_docking
• LigandAreaCOP : protocols::ligand_docking
• LigandAreaCOPs : protocols::ligand_docking
• LigandAreaOP : protocols::ligand_docking
• LigandAreaOPs : protocols::ligand_docking
• LigandAreas : protocols::ligand_docking
• LigandBaseProtocolCOP : protocols::ligand_docking
• LigandBaseProtocolOP : protocols::ligand_docking
• LigandConformerBuilderCOP : protocols::match::downstream
• LigandConformerBuilderOP : protocols::match::downstream
• LigandConformerCOP : protocols::toolbox::match_enzdes_util
• LigandConformerOP : protocols::toolbox::match_enzdes_util
• LigandDesignCOP : protocols::ligand_docking
• LigandDesignOP : protocols::ligand_docking
• LigandDockMainOP : protocols::ligand_docking
• LigandDockProtocolCOP : protocols::ligand_docking
• LigandDockProtocolOP : protocols::ligand_docking
• LigandMotifSearchCOP : protocols::motifs
• LigandMotifSearchOP : protocols::motifs
• LightChainTypeEnum : protocols::antibody
• LightChainTypeEnum_start : protocols::antibody
• LightChainTypeEnum_total : protocols::antibody
• limit_chunk_size() : protocols::nonlocal
• limit_rotamer_set() : protocols::multistate_design
• LimitAromaChi2_RotamerSetOperationCOP : protocols::toolbox::task_operations
• LimitAromaChi2_RotamerSetOperationOP : protocols::toolbox::task_operations
• LimitAromaChi2OperationCOP : protocols::toolbox::task_operations
• LimitAromaChi2OperationOP : protocols::toolbox::task_operations
• LimitHitsPerRotamerFilterCOP : protocols::match::output
• LimitHitsPerRotamerFilterOP : protocols::match::output
• linear : protocols::canonical_sampling
• linear_chainbreak() : protocols::forge::methods
• linker_count2score() : protocols::sic_dock
• LinkerScoreCOP : protocols::sic_dock
• LinkerScoreOP : protocols::sic_dock
• LinkResiduesCOP : protocols::toolbox::task_operations
• LinkResiduesOP : protocols::toolbox::task_operations
• LipoFileLoaderCOP : protocols::membrane::io
• LipoFileLoaderOP : protocols::membrane::io
• LipoFileOptionsCOP : protocols::membrane::io
• LipoFileOptionsOP : protocols::membrane::io
• list_amino_acid_options() : protocols::multistate_design
• LnExpressionCOP : protocols::pack_daemon
• LnExpressionOP : protocols::pack_daemon
• load_avge_polynomial_coefficients() : protocols::sasa_scores
• load_build_position_data() : protocols::motifs
• load_checkpoint() : protocols::dna
• load_component_weights() : protocols::optimize_weights
• load_coords_and_torsions() : protocols::loops::loop_closure::ccd
• load_dna_design_defs_from_file() : protocols::dna
• load_dna_design_defs_from_options() : protocols::dna
• load_dna_design_defs_from_strings() : protocols::dna
• load_loop_definitions() : protocols::loops::loops_definers
• load_poses() : protocols::simple_filters
• load_s_and_l() : protocols::jobdist , protocols::stepwise::sampler::protein
• load_sasapack_polynomial_coefficients() : protocols::sasa_scores
• LoadPDBMoverCOP : protocols::simple_moves
• LoadPDBMoverOP : protocols::simple_moves
• LoadUnboundRotMoverCOP : protocols::simple_moves
• LoadUnboundRotMoverOP : protocols::simple_moves
• local_count_data : protocols::stepwise::legacy::modeler::rna
• LocalInserter_SimpleMinCOP : protocols::loophash
• LocalInserter_SimpleMinOP : protocols::loophash
• LocalInserterCOP : protocols::loophash
• LocalInserterOP : protocols::loophash
• LocalPosition : protocols::topology_broker::claims
• LogFilePerturberCOP : protocols::kinematic_closure::perturbers
• LogFilePerturberOP : protocols::kinematic_closure::perturbers
• look_for_jumps() : protocols::stepwise::modeler::rna::sugar
• look_for_jumps_to_next() : protocols::stepwise::modeler::rna::sugar
• look_for_jumps_to_previous() : protocols::stepwise::modeler::rna::sugar
• look_for_non_jump_reference_to_next() : protocols::stepwise::modeler::rna::sugar
• look_for_non_jump_reference_to_previous() : protocols::stepwise::modeler::rna::sugar
• look_for_unique_jump_to_moving_res() : protocols::stepwise::modeler
• looks_like_reference_pose() : protocols::stepwise::setup
• LookupMode : protocols::indexed_structure_store::filters
• loop_bump_check : protocols::generalized_kinematic_closure::filter
• LOOP_CLOSURE : protocols::abinitio
• loop_local_rmsd() : protocols::loops
• loop_mover_from_tag() : protocols::loop_modeling::utilities
• loop_rmsd() : protocols::loops
• loop_rmsd_with_superimpose() : protocols::loops
• loop_rmsd_with_superimpose_core() : protocols::loops
• loop_stop_comp() : protocols::abinitio::abscript
• LoopAnalyzerMoverOP : protocols::analysis
• LoopAnchorFeaturesCOP : protocols::features
• LoopAnchorFeaturesOP : protocols::features
• LoopBuild_main() : protocols::loop_build
• LoopBuilderCOP : protocols::loop_modeling
• LoopBuilderOP : protocols::loop_modeling
• LoopBuildMoverCOP : protocols::loop_build
• LoopBuildMoverOP : protocols::loop_build
• LoopClosureCOP : protocols::loops::loop_closure::ccd
• LoopClosureOP : protocols::loops::loop_closure::ccd
• LoopCMAP : protocols::loops::loop_mover
• LoopCMCAP : protocols::loops::loop_mover
• LoopCMCOP : protocols::loops::loop_mover
• LoopCMOP : protocols::loops::loop_mover
• LoopConfiguration : protocols::loops
• LoopCOP : protocols::fldsgn::topology , protocols::loops
• LoopFilterCOP : protocols::loop_modeling::utilities
• LoopFilterOP : protocols::loop_modeling::utilities
• loopfinder() : protocols::loops
• LoopFragmentClaimerAP : protocols::topology_broker
• LoopFragmentClaimerCAP : protocols::topology_broker
• LoopFragmentClaimerCOP : protocols::topology_broker
• LoopFragmentClaimerOP : protocols::topology_broker
• loophash_main() : protocols::loophash
• LoopHashLibraryCOP : protocols::loophash
• LoopHashLibraryLoaderCOP : protocols::loophash
• LoopHashLibraryLoaderOP : protocols::loophash
• LoopHashLibraryOP : protocols::loophash
• LoopHashLibraryOptionsCOP : protocols::loophash
• LoopHashLibraryOptionsOP : protocols::loophash
• LoopHashRelaxProtocolCOP : protocols::loophash
• LoopHashRelaxProtocolOP : protocols::loophash
• LoopHashSamplerCOP : protocols::loophash
• LoopHashSamplerOP : protocols::loophash
• LoopJumpFoldCstCOP : protocols::abinitio
• LoopJumpFoldCstOP : protocols::abinitio
• LoopLengthChangeCOP : protocols::protein_interface_design::movers
• LoopLengthChangeOP : protocols::protein_interface_design::movers
• LoopModelerCOP : protocols::loop_modeling
• LoopModelerOP : protocols::loop_modeling
• LoopmodelWrapperCOP : protocols::loop_build
• LoopmodelWrapperOP : protocols::loop_build
• LoopMover_Perturb_CCDCOP : protocols::loops::loop_mover::perturb
• LoopMover_Perturb_CCDOP : protocols::loops::loop_mover::perturb
• LoopMover_Perturb_KICCOP : protocols::loops::loop_mover::perturb
• LoopMover_Perturb_KICOP : protocols::loops::loop_mover::perturb
• LoopMover_Perturb_QuickCCD_MovesCOP : protocols::loops::loop_mover::perturb
• LoopMover_Perturb_QuickCCD_MovesOP : protocols::loops::loop_mover::perturb
• LoopMover_Perturb_QuickCCDCOP : protocols::loops::loop_mover::perturb
• LoopMover_Perturb_QuickCCDOP : protocols::loops::loop_mover::perturb
• LoopMover_Refine_BackrubCOP : protocols::loops::loop_mover::refine
• LoopMover_Refine_BackrubOP : protocols::loops::loop_mover::refine
• LoopMover_Refine_CCDAP : protocols::loops::loop_mover::refine
• LoopMover_Refine_CCDCAP : protocols::loops::loop_mover::refine
• LoopMover_Refine_CCDCOP : protocols::loops::loop_mover::refine
• LoopMover_Refine_CCDOP : protocols::loops::loop_mover::refine
• LoopMover_Refine_KICCOP : protocols::loops::loop_mover::refine
• LoopMover_Refine_KICOP : protocols::loops::loop_mover::refine
• LoopMoverAP : protocols::loops::loop_mover
• LoopMoverCAP : protocols::loops::loop_mover
• LoopMoverCOP : protocols::loop_modeling , protocols::loops::loop_mover
• LoopMoverCOPs : protocols::loop_modeling
• LoopMoverFromCommandLineCOP : protocols::protein_interface_design::movers
• LoopMoverFromCommandLineOP : protocols::protein_interface_design::movers
• LoopMoverGroupCOP : protocols::loop_modeling::utilities
• LoopMoverGroupOP : protocols::loop_modeling::utilities
• LoopMoverOP : protocols::loop_modeling , protocols::loops::loop_mover
• LoopMoverOPs : protocols::loop_modeling
• LoopMovers : protocols::loop_modeling
• LoopOP : protocols::fldsgn::topology , protocols::loops
• LoopPivotsCOP : protocols::kinematic_closure::pivot_pickers
• LoopPivotsOP : protocols::kinematic_closure::pivot_pickers
• LoopProtocolCOP : protocols::loop_modeling
• LoopProtocolOP : protocols::loop_modeling
• LoopRefineInnerCycleContainerCOP : protocols::loops::loop_mover::refine
• LoopRefineInnerCycleContainerOP : protocols::loops::loop_mover::refine
• LoopRefineInnerCycleCOP : protocols::loops::loop_mover::refine
• LoopRefineInnerCycleName : protocols::loops::loop_mover::refine
• LoopRefineInnerCycleOP : protocols::loops::loop_mover::refine
• LoopRelaxMoverCOP : protocols::comparative_modeling
• LoopRelaxMoverOP : protocols::comparative_modeling
• LoopRelaxThreadingMoverCOP : protocols::comparative_modeling
• LoopRelaxThreadingMoverOP : protocols::comparative_modeling
• LoopRemodelCOP : protocols::protein_interface_design::movers
• LoopRemodelOP : protocols::protein_interface_design::movers
• LoopResult : protocols::loops::loop_mover
• LoopRlxMoverCOP : protocols::antibody_legacy
• LoopRlxMoverOP : protocols::antibody_legacy
• Loops : protocols::fldsgn::topology
• loops_are_closed() : protocols::comparative_modeling
• loops_around_residues() : protocols::loops
• loops_from_alignment() : protocols::comparative_modeling
• loops_from_string() : protocols::loops
• loops_from_transitive_alignments() : protocols::comparative_modeling
• loops_set_chainbreak_weight() : protocols::loops::loop_mover
• loops_set_move_map() : protocols::loops
• LoopsCOP : protocols::loops
• LoopsDatabaseDefinerCOP : protocols::loops::loops_definers
• LoopsDatabaseDefinerCreatorCOP : protocols::loops::loops_definers
• LoopsDatabaseDefinerCreatorOP : protocols::loops::loops_definers
• LoopsDatabaseDefinerOP : protocols::loops::loops_definers
• LoopsDefinerCOP : protocols::loops::loops_definers
• LoopsDefinerCreatorCOP : protocols::loops::loops_definers
• LoopsDefinerCreatorOP : protocols::loops::loops_definers
• LoopsDefinerOP : protocols::loops::loops_definers
• LoopsExplicitDefinerCOP : protocols::loops::loops_definers
• LoopsExplicitDefinerCreatorCOP : protocols::loops::loops_definers
• LoopsExplicitDefinerCreatorOP : protocols::loops::loops_definers
• LoopsExplicitDefinerOP : protocols::loops::loops_definers
• LoopsFileDataCOP : protocols::loops
• LoopsFileDataOP : protocols::loops
• LoopsFileDefinerCOP : protocols::loops::loops_definers
• LoopsFileDefinerCreatorCOP : protocols::loops::loops_definers
• LoopsFileDefinerCreatorOP : protocols::loops::loops_definers
• LoopsFileDefinerOP : protocols::loops::loops_definers
• LoopsFileFallbackConfigurationCOP : protocols::loops
• LoopsFileFallbackConfigurationOP : protocols::loops
• LoopsFileIOCOP : protocols::loops
• LoopsFileIOOP : protocols::loops
• LoopsFileLoaderCOP : protocols::loops
• LoopsFileLoaderOP : protocols::loops
• LoopsFileOptionsCOP : protocols::loops
• LoopsFileOptionsOP : protocols::loops
• LoopsOP : protocols::loops
• loopstring_to_loopregions() : protocols::mpi_refinement
• loopstring_to_loopvector() : protocols::mpi_refinement
• lowest_delta_torsion_selector : protocols::generalized_kinematic_closure::selector
• lowest_energy_selector : protocols::generalized_kinematic_closure::selector
• lowest_rmsd_selector : protocols::generalized_kinematic_closure::selector
• lt_OP_deref() : protocols::genetic_algorithm
• lzs() : protocols::kinmatch